Histone_ChIP-seq_ENCSR815DXY
Histone_ChIP-seq ENCSR815DXY [biosample_summary="Homo sapiens trophoblast cell originated from H1" and target="H3K9ac"]
×
| Id: | Histone_ChIP-seq/ENCSR815DXY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR815DXY [biosamplesummary="Homo sapiens trophoblast cell originated from H1" and target="H3K9ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male embryo output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN795SCA|/analyses/ENCAN795SCA/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN795SCA|/analyses/ENCAN795SCA/} has in progress subobject document {f8a2f21e-cd2c-4f1b-8405-55f385587135|/documents/f8a2f21e-cd2c-4f1b-8405-55f385587135/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF745WNS|/files/ENCFF745WNS/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF745WNS|/files/ENCFF745WNS/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.14. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR815DXY | float |
Histone_ChIP-seq_ENCSR815DXY |
Histone_ChIP-seq ENCSR815DXY [biosample_summary="Homo sapiens trophoblast cell originated from H1" and target="H3K9ac"]
|
|
[1.53, 14.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF072NRU.bed.gz | 1.12 MB | 414da5d3e56f3e448ad0eb45aafde6e4 |
| ENCFF072NRU.bed.gz.dvc | 101.0 B | a1581e76aa2c5b5fa99e3c67fde05210 |
| ENCFF072NRU.tabix.bed.gz | 531.33 KB | 9157343246680edfd1db892c30ff519a |
| ENCFF072NRU.tabix.bed.gz.dvc | 106.0 B | 0e35c9cc8a4141230027ee8464ebe0b5 |
| ENCFF072NRU.tabix.bed.gz.tbi | 260.87 KB | 6b287eb479811771cfb74edc6dae04ee |
| ENCFF072NRU.tabix.bed.gz.tbi.dvc | 110.0 B | 2c657ada9d1e06ae9701f4eaf8953e0d |
| genomic_resource.yaml | 2.96 KB | a6ad7128493f248cef78b1b56b0ca42a |
| genomic_resource_original.yaml | 2.83 KB | a5919b5d0592bc0ed0866a2ce43a0885 |
| statistics/ |