Resource
| Id | Histone_ChIP-seq/ENCSR815DXY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR815DXY [biosample_summary="Homo sapiens trophoblast cell originated from H1" and target="H3K9ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male embryo output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN795SCA|/analyses/ENCAN795SCA/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN795SCA|/analyses/ENCAN795SCA/} has in progress subobject document {f8a2f21e-cd2c-4f1b-8405-55f385587135|/documents/f8a2f21e-cd2c-4f1b-8405-55f385587135/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF745WNS|/files/ENCFF745WNS/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF745WNS|/files/ENCFF745WNS/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.14. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR815DXY | float |
Histone_ChIP-seq_ENCSR815DXY |
Histone_ChIP-seq ENCSR815DXY [biosample_summary="Homo sapiens trophoblast cell originated from H1" and target="H3K9ac"]
|
 |
[1.53, 14.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 14441559 | 0.45% | 51073 |
| chr1 | 1409815 | 0.57% | 4818 |
| chr2 | 1049865 | 0.43% | 3938 |
| chr3 | 854499 | 0.43% | 3134 |
| chr4 | 589766 | 0.31% | 2162 |
| chr5 | 748902 | 0.41% | 2774 |
| chr6 | 829259 | 0.49% | 2985 |
| chr7 | 700484 | 0.44% | 2550 |
| chr8 | 570625 | 0.39% | 2193 |
| chr9 | 609832 | 0.44% | 2135 |
| chr10 | 632765 | 0.47% | 2369 |
| chr11 | 764451 | 0.57% | 2591 |
| chr12 | 752819 | 0.56% | 2524 |
| chr13 | 300619 | 0.26% | 1154 |
| chr14 | 469278 | 0.44% | 1686 |
| chr15 | 470047 | 0.46% | 1683 |
| chr16 | 597875 | 0.66% | 2030 |
| chr17 | 778861 | 0.94% | 2507 |
| chr18 | 280792 | 0.35% | 1177 |
| chr19 | 899285 | 1.53% | 2733 |
| chr20 | 417935 | 0.65% | 1537 |
| chr21 | 143369 | 0.31% | 561 |
| chr22 | 310686 | 0.61% | 1033 |
| chrX | 249762 | 0.16% | 775 |
| chrY | 9968 | 0.02% | 24 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 51073 | 110 | 3945 | 282.76 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF072NRU.bed.gz | 1.12 MB | 414da5d3e56f3e448ad0eb45aafde6e4 |
| ENCFF072NRU.tabix.bed.gz | 531.33 KB | 9157343246680edfd1db892c30ff519a |
| ENCFF072NRU.tabix.bed.gz.tbi | 260.87 KB | 6b287eb479811771cfb74edc6dae04ee |
| genomic_resource.yaml | 2.96 KB | a6ad7128493f248cef78b1b56b0ca42a |
| statistics/ |