Histone_ChIP-seq_ENCSR814XPE
Histone_ChIP-seq ENCSR814XPE [biosample_summary="Homo sapiens H1" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR814XPE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR814XPE [biosamplesummary="Homo sapiens H1" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN665WYP|/analyses/ENCAN665WYP/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF539XVD|/files/ENCFF539XVD/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF539XVD|/files/ENCFF539XVD/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.82. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR814XPE | float |
Histone_ChIP-seq_ENCSR814XPE |
Histone_ChIP-seq ENCSR814XPE [biosample_summary="Homo sapiens H1" and target="H3K4me3"]
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[1.56, 63.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF192QQV.bed.gz | 1.18 MB | 387863ce50dae4120a70a9b4f1b535a8 |
| ENCFF192QQV.bed.gz.dvc | 101.0 B | 1042f2d39ca23a3c390e70e072d564aa |
| ENCFF192QQV.tabix.bed.gz | 495.98 KB | 86b4815d5313512ae0bd8ca20d75dca9 |
| ENCFF192QQV.tabix.bed.gz.dvc | 106.0 B | 47b51c3047bf1e0666a9b29b0cfc1eaa |
| ENCFF192QQV.tabix.bed.gz.tbi | 223.36 KB | cd9f9e445361cc5e058d06f77370cbd6 |
| ENCFF192QQV.tabix.bed.gz.tbi.dvc | 110.0 B | 5c5f6fd44c9682aca7051aa6d9163068 |
| genomic_resource.yaml | 2.65 KB | 0c2c2d7f78ea456ab30f95b171814ffe |
| genomic_resource_original.yaml | 2.55 KB | 1d784da7abeb284a76c6628b7cfd0755 |
| statistics/ |