Resource

Id Histone_ChIP-seq/ENCSR813ZEYcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR813ZEY [biosample_summary="Homo sapiens transverse colon tissue male adult (37 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR813ZEY
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001157/
  • biosample_summary: Homo sapiens transverse colon tissue male adult (37 years)
  • date_created: 2017-07-28T10:05:38.937819+00:00
  • date_released: 2017-08-28
  • doi: 10.17989/ENCSR813ZEY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR813ZEY float

Histone_ChIP-seq_ENCSR813ZEY
Histone_ChIP-seq ENCSR813ZEY [biosample_summary="Homo sapiens transverse colon tissue male adult (37 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR813ZEY [1.3, 51.7]
n
51,912,044
mean
19.4
sd
10.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 519120441.61% 31174
chr1 5182397 2.08% 3052
chr1_KI270712v1_random 4536 2.58% 5
chr1_KI270713v1_random 914 2.24% 2
chr1_KI270714v1_random 384 0.92% 1
chr2 3601693 1.49% 2137
chr3 2916094 1.47% 1728
chr4 2176846 1.14% 1313
chr5 2413441 1.33% 1397
chr6 2981790 1.75% 1735
chr7 2609327 1.64% 1582
chr8 1901815 1.31% 1177
chr9 2162255 1.56% 1336
chr9_KI270717v1_random 565 1.41% 1
chr10 2235195 1.67% 1377
chr11 2793108 2.07% 1613
chr12 2715694 2.04% 1554
chr13 1077962 0.94% 664
chr14 1702466 1.59% 1004
chr14_GL000194v1_random 245 0.13% 1
chr15 1687224 1.65% 980
chr16 2008326 2.22% 1248
chr17 3055438 3.67% 1789
chr17_GL000205v2_random 2906 1.57% 2
chr18 893021 1.11% 590
chr19 3258925 5.56% 2065
chr20 1359283 2.11% 834
chr21 520270 1.11% 337
chr22 1161127 2.28% 725
chr22_KI270732v1_random 281 0.68% 1
chr22_KI270733v1_random 1031 0.57% 2
chrUn_GL000195v1 2657 1.45% 3
chrUn_GL000219v1 6002 3.35% 3
chrUn_GL000220v1 630 0.39% 2
chrUn_KI270438v1 998 0.89% 2
chrUn_KI270467v1 1329 33.90% 2
chrX 1422840 0.91% 883
chrY 53029 0.09% 27
3329 contigs with no values (127539822 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 31174 210 26610 1665.24 1303
global segment-length histogram

Files

Filename Size md5
ENCFF384IAN.bed.gz 891.42 KB 2aa1f9ed07fdeba1e3a70f7e2076f4c4
ENCFF384IAN.tabix.bed.gz 367.36 KB c8fe1edd65b332842028a56ab8ba1260
ENCFF384IAN.tabix.bed.gz.tbi 184.08 KB 1a968bfcc66e071f48fe40d26b8ad56d
genomic_resource.yaml 1.51 KB 418abb7880534154aa84654f921e350b
statistics/