Resource

Id Histone_ChIP-seq/ENCSR813HFVcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR813HFV [biosample_summary="Homo sapiens lung tissue female embryo (120 days)" and target="H3K9ac"]
Description
Labels
  • accession: ENCSR813HFV
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002048/
  • biosample_summary: Homo sapiens lung tissue female embryo (120 days)
  • date_created: 2015-09-15T19:52:12.173684+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR813HFV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (120 days)
  • status: released
  • submitter_comment: As of June 22, 2017, this experiment's biosample (and donor) has been changed. A SNP-analysis shows that the original donor (ENCDO308YQF) was incorrect. 10/27/17: Control biosample.summary does not match Experiment (former control: ENCSR724XIL).
  • target: H3K9ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR813HFV float

Histone_ChIP-seq_ENCSR813HFV
Histone_ChIP-seq ENCSR813HFV [biosample_summary="Homo sapiens lung tissue female embryo (120 days)" and target="H3K9ac"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR813HFV [1.72, 48]
n
31,661,595
mean
8.72
sd
5.63

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 316615950.98% 50956
chr1 3054948 1.23% 4767
chr2 2390724 0.99% 3792
chr3 2099084 1.06% 3320
chr4 1364192 0.72% 2141
chr5 1575944 0.87% 2408
chr6 2005521 1.17% 2961
chr7 1420704 0.89% 2218
chr8 1206754 0.83% 2019
chr9 1373106 0.99% 2336
chr10 1513288 1.13% 2509
chr11 1695458 1.26% 2646
chr12 1744814 1.31% 2664
chr13 759258 0.66% 1263
chr14 1158684 1.08% 1855
chr15 1086497 1.07% 1778
chr16 992792 1.10% 1821
chr17 1767442 2.12% 2912
chr18 644265 0.80% 1088
chr19 1492934 2.55% 2476
chr20 768536 1.19% 1312
chr21 265108 0.57% 444
chr22 608334 1.20% 1068
chrX 673208 0.43% 1158
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 50956 165 16748 621.35 458
global segment-length histogram

Files

Filename Size md5
ENCFF330TSX.bed.gz 1.07 MB c7721077c2451e8a3b16fef8b04970fa
ENCFF330TSX.tabix.bed.gz 522.32 KB afc2a6180f9cb47367c2fd3ac86516c9
ENCFF330TSX.tabix.bed.gz.tbi 209.71 KB 2529d1f1baed4904228cc8692d0e5632
genomic_resource.yaml 1.96 KB 6428018519e5789bdbc85398960d5ce2
statistics/