Resource
| Id | Histone_ChIP-seq/ENCSR810BDB |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR810BDB [biosample_summary="Homo sapiens HCT116" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN621ZXP|/analyses/ENCAN621ZXP/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF933YRM|/files/ENCFF933YRM/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 18068498 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF293SFY|/files/ENCFF293SFY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 23832435 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR810BDB | float |
Histone_ChIP-seq_ENCSR810BDB |
Histone_ChIP-seq ENCSR810BDB [biosample_summary="Homo sapiens HCT116" and target="H3K27me3"]
|
 |
[1.66, 11.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 82135984 | 2.55% | 106257 |
| chr1 | 7226219 | 2.90% | 9274 |
| chr2 | 6142448 | 2.54% | 8224 |
| chr3 | 5590493 | 2.82% | 7523 |
| chr4 | 2591981 | 1.36% | 3633 |
| chr5 | 4968869 | 2.74% | 6551 |
| chr6 | 3777352 | 2.21% | 5204 |
| chr7 | 4002514 | 2.51% | 5330 |
| chr8 | 6004930 | 4.14% | 7666 |
| chr9 | 3626842 | 2.62% | 5090 |
| chr10 | 6401908 | 4.78% | 7575 |
| chr11 | 5365493 | 3.97% | 6743 |
| chr12 | 4488685 | 3.37% | 5444 |
| chr13 | 2358584 | 2.06% | 3126 |
| chr14 | 2240925 | 2.09% | 2900 |
| chr15 | 2835598 | 2.78% | 3571 |
| chr16 | 3526372 | 3.90% | 4636 |
| chr17 | 2699515 | 3.24% | 3113 |
| chr17_GL000205v2_random | 45644 | 24.59% | 22 |
| chr18 | 1803383 | 2.24% | 2458 |
| chr19 | 1076343 | 1.84% | 1375 |
| chr20 | 2735920 | 4.25% | 3416 |
| chr21 | 575598 | 1.23% | 778 |
| chr22 | 1661174 | 3.27% | 1907 |
| chr22_KI270733v1_random | 3192 | 1.78% | 5 |
| chrUn_GL000219v1 | 15872 | 8.86% | 14 |
| chrX | 370130 | 0.24% | 679 |
| 3340 contigs with no values (185759939 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 106257 | 205 | 16435 | 772.99 | 585 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF806AYM.bed.gz | 2.14 MB | 9a1dd2f650f7b374d20a6ca406d5251a |
| ENCFF806AYM.tabix.bed.gz | 1.04 MB | 27588787c6a38e1402def98bb60cf34d |
| ENCFF806AYM.tabix.bed.gz.tbi | 167.84 KB | 372974b9c2b73fdf3eb83a3c53f94fba |
| genomic_resource.yaml | 2.56 KB | b0027e1e46cf5b52537277ec3333e1ac |
| statistics/ |