Resource

Id Histone_ChIP-seq/ENCSR808DPZcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR808DPZ [biosample_summary="Homo sapiens BLaER1 6 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR808DPZ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0030018/
  • biosample_summary: Homo sapiens BLaER1 6 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • date_created: 2022-01-27T21:50:28.430037+00:00
  • date_released: 2022-05-10
  • doi: 10.17989/ENCSR808DPZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: 6 hours after the sample was treated with 100 nM 17β-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL CSF1
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR808DPZ float

Histone_ChIP-seq_ENCSR808DPZ
Histone_ChIP-seq ENCSR808DPZ [biosample_summary="Homo sapiens BLaER1 6 hours after the sample\ \ was treated with 100 nM 17\u03B2-estradiol, 10 ng/mL Interleukin-3, 10 ng/mL\ \ CSF1" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR808DPZ [1.25, 116]
n
56,224,578
mean
40.1
sd
33.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 562245781.75% 53330
chr1 5362502 2.15% 4987
chr1_KI270709v1_random 1400 2.09% 3
chr1_KI270712v1_random 3285 1.87% 5
chr1_KI270713v1_random 1527 3.75% 3
chr2 3698880 1.53% 3666
chr3 2782946 1.40% 2522
chr3_GL000221v1_random 956 0.62% 1
chr4 1923453 1.01% 1778
chr4_GL000008v2_random 337 0.16% 1
chr5 2556709 1.41% 2311
chr6 2816703 1.65% 2386
chr7 2724598 1.71% 2583
chr8 2196081 1.51% 2174
chr9 2408718 1.74% 2324
chr9_KI270717v1_random 452 1.13% 1
chr9_KI270719v1_random 709 0.40% 2
chr10 2432185 1.82% 2434
chr11 2880296 2.13% 2582
chr12 2770506 2.08% 2439
chr13 1051965 0.92% 978
chr14 1891913 1.77% 1800
chr14_GL000009v2_random 615 0.30% 1
chr14_GL000194v1_random 2130 1.11% 4
chr14_GL000225v1_random 1808 0.86% 6
chr14_KI270724v1_random 489 1.24% 1
chr14_KI270725v1_random 1061 0.61% 3
chr15 1733966 1.70% 1700
chr15_KI270727v1_random 701 0.16% 2
chr16 2606661 2.89% 2587
chr16_KI270728v1_random 1455 0.08% 4
chr17 3673545 4.41% 3410
chr17_GL000205v2_random 9993 5.38% 6
chr17_KI270729v1_random 7967 2.84% 15
chr17_KI270730v1_random 538 0.48% 2
chr18 881523 1.10% 831
chr19 4214825 7.19% 4239
chr20 1661520 2.58% 1672
chr21 776748 1.66% 843
chr22 1659086 3.26% 1722
chr22_KI270732v1_random 275 0.66% 1
chr22_KI270733v1_random 3497 1.95% 8
chr22_KI270736v1_random 1084 0.60% 3
chr22_KI270737v1_random 502 0.48% 2
chrUn_GL000195v1 4428 2.42% 7
chrUn_GL000214v1 528 0.38% 2
chrUn_GL000216v2 2605 1.48% 6
chrUn_GL000219v1 3748 2.09% 3
chrUn_GL000220v1 1430 0.88% 4
chrUn_GL000224v1 337 0.19% 1
chrUn_KI270438v1 6825 6.07% 6
chrUn_KI270442v1 2421 0.62% 8
chrUn_KI270589v1 583 1.31% 2
chrUn_KI270744v1 1634 0.97% 5
chrUn_KI270749v1 483 0.30% 1
chrUn_KI270751v1 536 0.36% 2
chrUn_KI270754v1 540 1.34% 2
chrUn_KI270756v1 267 0.34% 1
chrUn_KI270757v1 251 0.35% 1
chrX 1447006 0.93% 1223
chrY 4846 0.01% 14
3306 contigs with no values (121751687 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 53330 250 19360 1054.28 522
global segment-length histogram

Files

Filename Size md5
ENCFF962VYM.bed.gz 1.16 MB 6625a509c6ab69f6500a5012c7a30baa
ENCFF962VYM.tabix.bed.gz 553.4 KB 0a55c91286d16bdac084591933c9fdea
ENCFF962VYM.tabix.bed.gz.tbi 210.4 KB de8a34b02682819f4bf7f5e7290316ba
genomic_resource.yaml 3.11 KB 2cfec5f3f6ac2207f62a67b025a169e1
statistics/