Histone_ChIP-seq_ENCSR806XIU
Histone_ChIP-seq ENCSR806XIU [biosample_summary="Homo sapiens KMS-11" and target="H3K4me2"]
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| Id: | Histone_ChIP-seq/ENCSR806XIU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR806XIU [biosamplesummary="Homo sapiens KMS-11" and target="H3K4me2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN978BZK|/analyses/ENCAN978BZK/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF875DBI|/files/ENCFF875DBI/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF875DBI|/files/ENCFF875DBI/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.33. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR806XIU | float |
Histone_ChIP-seq_ENCSR806XIU |
Histone_ChIP-seq ENCSR806XIU [biosample_summary="Homo sapiens KMS-11" and target="H3K4me2"]
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[1.64, 14.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF109DRH.bed.gz | 1.55 MB | a6905d417cceb96c6bdc09a6ca9d0a53 |
| ENCFF109DRH.bed.gz.dvc | 101.0 B | f7c4041f693b59d4d75b7f58b8c99c72 |
| ENCFF109DRH.tabix.bed.gz | 694.26 KB | f1729643186ca81e8dabaf818a276e3b |
| ENCFF109DRH.tabix.bed.gz.dvc | 106.0 B | 0d50c357037d54fa2fe5999963c786ab |
| ENCFF109DRH.tabix.bed.gz.tbi | 253.25 KB | 296968f2f8385b4d73e9e0ab1e1ba6fc |
| ENCFF109DRH.tabix.bed.gz.tbi.dvc | 110.0 B | b7c92dfb451298c8eeedf453cf213631 |
| genomic_resource.yaml | 2.69 KB | 1f13abdefdeaaefdf6c66ed5c4011141 |
| genomic_resource_original.yaml | 2.58 KB | 0303bf3eac26bcd070b2658cc733ca2d |
| statistics/ |