Histone_ChIP-seq_ENCSR804FSU
Histone_ChIP-seq ENCSR804FSU [biosample_summary="Homo sapiens peripheral blood mononuclear cell male adult (28 years)" and target="H3K9ac"]
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| Id: | Histone_ChIP-seq/ENCSR804FSU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR804FSU [biosamplesummary="Homo sapiens peripheral blood mononuclear cell male adult (28 years)" and target="H3K9ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (28 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN449SAK|/analyses/ENCAN449SAK/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed redacted alignments file {ENCFF814SJU|/files/ENCFF814SJU/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 12996790 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF814SJU|/files/ENCFF814SJU/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF814SJU|/files/ENCFF814SJU/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.76. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR804FSU | float |
Histone_ChIP-seq_ENCSR804FSU |
Histone_ChIP-seq ENCSR804FSU [biosample_summary="Homo sapiens peripheral blood mononuclear cell male adult (28 years)" and target="H3K9ac"]
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[2.04, 41.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF472YRF.bed.gz | 1.01 MB | 2f83d5d3db04ebd7a20b424378831110 |
| ENCFF472YRF.bed.gz.dvc | 101.0 B | f8310d49ca3cd0238c94ec928d8ca1ee |
| ENCFF472YRF.tabix.bed.gz | 470.44 KB | 149ca0b5d8eee2741818893e370b6eb9 |
| ENCFF472YRF.tabix.bed.gz.dvc | 106.0 B | 1c26f0867e3a60602fcf8f5f02aa3769 |
| ENCFF472YRF.tabix.bed.gz.tbi | 211.75 KB | 9d18c28fc596aeaa0cead9ba932bdc1e |
| ENCFF472YRF.tabix.bed.gz.tbi.dvc | 110.0 B | 094e8840294b943e11de63d12a3dcadc |
| genomic_resource.yaml | 3.32 KB | ac165ec0a8a47d78c848c60b2f2da50a |
| genomic_resource_original.yaml | 3.17 KB | 2c5574af91cd024febbf391bfa0fbf48 |
| statistics/ |