Resource

Id Histone_ChIP-seq/ENCSR803JYIcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR803JYI [biosample_summary="Homo sapiens liver tissue female adult (25 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR803JYI
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002107/
  • biosample_summary: Homo sapiens liver tissue female adult (25 years)
  • date_created: 2015-09-15T19:52:16.038413+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR803JYI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (25 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR803JYI float

Histone_ChIP-seq_ENCSR803JYI
Histone_ChIP-seq ENCSR803JYI [biosample_summary="Homo sapiens liver tissue female adult (25 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR803JYI [1.36, 34.5]
n
31,221,914
mean
9.72
sd
5.24

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 312219140.97% 49711
chr1 2699021 1.08% 3922
chr2 2010539 0.83% 3151
chr3 1765730 0.89% 2676
chr4 1463666 0.77% 2510
chr5 1662558 0.92% 2801
chr6 1665422 0.98% 2550
chr7 1531721 0.96% 2685
chr8 1199801 0.83% 2025
chr9 1214551 0.88% 1862
chr10 1385383 1.04% 2193
chr11 1499198 1.11% 2264
chr12 1675047 1.26% 2553
chr13 632679 0.55% 1070
chr14 915570 0.86% 1352
chr15 902782 0.89% 1336
chr16 1161516 1.29% 1847
chr17 1310523 1.57% 1892
chr18 552888 0.69% 942
chr19 3677702 6.27% 6281
chr20 633751 0.98% 895
chr21 364984 0.78% 576
chr22 486427 0.96% 722
chrX 797972 0.51% 1577
chrY 12483 0.02% 29
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 49711 145 7568 628.07 419
global segment-length histogram

Files

Filename Size md5
ENCFF445TVA.bed.gz 1.02 MB 7e2ca2c44e6e06f09a81710cf431abbe
ENCFF445TVA.tabix.bed.gz 497.92 KB fc5dfbd76b3514e0216bc1c5d873e329
ENCFF445TVA.tabix.bed.gz.tbi 213.18 KB 979fdb3db5f4f3edd1eab4616cf3c216
genomic_resource.yaml 1.98 KB cc9ac576638936c405842c51e4061f03
statistics/