Resource
| Id | Histone_ChIP-seq/ENCSR803IBD |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR803IBD [biosample_summary="Homo sapiens thoracic aorta tissue male adult (37 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN213WSA|/analyses/ENCAN213WSA/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF792QJD|/files/ENCFF792QJD/} processed by ChIP-seq ENCODE3 hg19 pipeline has 41726878 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR803IBD | float |
Histone_ChIP-seq_ENCSR803IBD |
Histone_ChIP-seq ENCSR803IBD [biosample_summary="Homo sapiens thoracic aorta tissue male adult (37 years)" and target="H3K4me1"]
|
 |
[1.72, 16.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 152559308 | 4.74% | 134241 |
| chr1 | 14678484 | 5.90% | 12388 |
| chr2 | 13297004 | 5.49% | 11570 |
| chr3 | 12237061 | 6.17% | 10660 |
| chr4 | 7255524 | 3.81% | 6896 |
| chr5 | 8800758 | 4.85% | 7940 |
| chr6 | 8959025 | 5.25% | 8273 |
| chr7 | 6831412 | 4.29% | 6281 |
| chr8 | 6555418 | 4.52% | 5984 |
| chr9 | 7015660 | 5.07% | 5881 |
| chr10 | 9318873 | 6.96% | 7794 |
| chr11 | 7783579 | 5.76% | 6459 |
| chr12 | 7927425 | 5.95% | 7011 |
| chr13 | 3659611 | 3.20% | 3441 |
| chr14 | 4701757 | 4.39% | 4074 |
| chr15 | 5629972 | 5.52% | 4682 |
| chr16 | 4626234 | 5.12% | 4079 |
| chr17 | 6261938 | 7.52% | 5333 |
| chr18 | 2878255 | 3.58% | 2623 |
| chr19 | 3826649 | 6.53% | 3456 |
| chr20 | 3881368 | 6.02% | 3248 |
| chr21 | 1823115 | 3.90% | 1554 |
| chr22 | 2927030 | 5.76% | 2317 |
| chrX | 1643809 | 1.05% | 2231 |
| chrY | 39347 | 0.07% | 66 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 134241 | 250 | 25922 | 1136.46 | 827 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF101EYT.bed.gz | 2.78 MB | dc92c8f5397fd4a45858b757ad2aa9ce |
| ENCFF101EYT.tabix.bed.gz | 1.35 MB | 0aab0551acca10dcfd65db9b256980d9 |
| ENCFF101EYT.tabix.bed.gz.tbi | 329.17 KB | 97f9bf21293f83c077da1e2e0506a5fa |
| genomic_resource.yaml | 1.98 KB | 46e27b76b2410a34cbbfd4fdb52c609a |
| statistics/ |