Histone_ChIP-seq_ENCSR797IXN
Histone_ChIP-seq ENCSR797IXN [biosample_summary="Homo sapiens layer of hippocampus tissue male adult (73 years)" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR797IXN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR797IXN [biosamplesummary="Homo sapiens layer of hippocampus tissue male adult (73 years)" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (73 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN423NFY|/analyses/ENCAN423NFY/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF863LPA|/files/ENCFF863LPA/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 18901218 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF863LPA|/files/ENCFF863LPA/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF863LPA|/files/ENCFF863LPA/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.00. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR797IXN | float |
Histone_ChIP-seq_ENCSR797IXN |
Histone_ChIP-seq ENCSR797IXN [biosample_summary="Homo sapiens layer of hippocampus tissue male adult (73 years)" and target="H3K4me1"]
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[1.77, 19.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF123QQE.bed.gz | 1.93 MB | 1c65985635ab54a7587633311c4df2b1 |
| ENCFF123QQE.bed.gz.dvc | 101.0 B | 62a0281bd3a13d2c67fe6aaac12307b8 |
| ENCFF123QQE.tabix.bed.gz | 971.47 KB | 4283844e4a891ac9624adfd301dc960a |
| ENCFF123QQE.tabix.bed.gz.dvc | 106.0 B | 46549749896d8d483917a3ee2a67dafd |
| ENCFF123QQE.tabix.bed.gz.tbi | 293.27 KB | 354a8addb063b3c0b13c1c451764ecbc |
| ENCFF123QQE.tabix.bed.gz.tbi.dvc | 110.0 B | 346f6d36e876c33d7f10fa387391ba64 |
| genomic_resource.yaml | 3.29 KB | 8fe721f6033c68820c5dc6efb2a55e11 |
| genomic_resource_original.yaml | 3.14 KB | 6df98304e9f077b478595fd159e798e9 |
| statistics/ |