Histone_ChIP-seq_ENCSR797GOJ
Histone_ChIP-seq ENCSR797GOJ [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR797GOJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR797GOJ [biosamplesummary="Homo sapiens CD8-positive, alpha-beta T cell" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN993VOW|/analyses/ENCAN993VOW/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF504BFM|/files/ENCFF504BFM/} processed by ChIP-seq ENCODE3 hg19 pipeline has 13041431 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed redacted alignments file {ENCFF955QEC|/files/ENCFF955QEC/} processed by ChIP-seq ENCODE3 hg19 pipeline has 14663363 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF955QEC|/files/ENCFF955QEC/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF955QEC|/files/ENCFF955QEC/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.93. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR797GOJ | float |
Histone_ChIP-seq_ENCSR797GOJ |
Histone_ChIP-seq ENCSR797GOJ [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell" and target="H3K27me3"]
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[1.5, 11.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF775AXL.bed.gz | 359.93 KB | 7200df4fef0717df6e83f4e934df6398 |
| ENCFF775AXL.bed.gz.dvc | 100.0 B | 10cd36f49251438ff65bf873502cec88 |
| ENCFF775AXL.tabix.bed.gz | 185.57 KB | fa47b95bcc5dc994e76b663a03ad32d1 |
| ENCFF775AXL.tabix.bed.gz.dvc | 106.0 B | 383f623080b4fb57e9b8e415ff2d9c7e |
| ENCFF775AXL.tabix.bed.gz.tbi | 92.66 KB | 6aa244536d107a9bfe0cb511261eac2d |
| ENCFF775AXL.tabix.bed.gz.tbi.dvc | 109.0 B | 2cce26708eb9f44c81f4f6ef3aeb7906 |
| genomic_resource.yaml | 3.85 KB | 53f22dc9c8c86cf63b6a018b7884fed3 |
| genomic_resource_original.yaml | 3.72 KB | d055caf486e4ae42002dd0c7a7454645 |
| statistics/ |