Histone_ChIP-seq_ENCSR796FCS
Histone_ChIP-seq ENCSR796FCS [biosample_summary="Homo sapiens CD14-positive monocyte male adult (37 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR796FCS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR796FCS [biosamplesummary="Homo sapiens CD14-positive monocyte male adult (37 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN629DRF|/analyses/ENCAN629DRF/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF993LIK|/files/ENCFF993LIK/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 19591649 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF993LIK|/files/ENCFF993LIK/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR796FCS | float |
Histone_ChIP-seq_ENCSR796FCS |
Histone_ChIP-seq ENCSR796FCS [biosample_summary="Homo sapiens CD14-positive monocyte male adult (37 years)" and target="H3K4me3"]
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[2, 133] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF275IMY.bed.gz | 699.23 KB | bbaf18a4a60574b4ba73ecd8d2312e12 |
| ENCFF275IMY.bed.gz.dvc | 100.0 B | d537540e59eabaa2b2fb77bb534ad245 |
| ENCFF275IMY.tabix.bed.gz | 292.39 KB | b0ea97e555ab8e0e9a1b7756af0e1a13 |
| ENCFF275IMY.tabix.bed.gz.dvc | 106.0 B | ef02d00f66e8bff3000331e13a252b4f |
| ENCFF275IMY.tabix.bed.gz.tbi | 142.68 KB | 15f69e3e8680f6fabd3c29f8e34c78cb |
| ENCFF275IMY.tabix.bed.gz.tbi.dvc | 110.0 B | eb3bb1a4e372848022fef87e3582593c |
| genomic_resource.yaml | 2.63 KB | 852a48b920cd456687903f7cebd296e5 |
| genomic_resource_original.yaml | 2.49 KB | b1291cdd26bf23eb333ab1927319eec2 |
| statistics/ |