| Id: | Histone_ChIP-seq/ENCSR795VEN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR795VEN [biosamplesummary="Homo sapiens with nonobstructive coronary artery disease; liver tissue male adult (32 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (32 years) with nonobstructive coronary artery disease output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN757QZA|/analyses/ENCAN757QZA/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN757QZA|/analyses/ENCAN757QZA/} has in progress subobject document {37cf2538-7c34-4cd0-9bc2-92a9679d2cef|/documents/37cf2538-7c34-4cd0-9bc2-92a9679d2cef/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF623YQY|/files/ENCFF623YQY/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR795VEN | float |
Histone_ChIP-seq_ENCSR795VEN |
Histone_ChIP-seq ENCSR795VEN [biosample_summary="Homo sapiens with nonobstructive coronary artery disease; liver tissue male adult (32 years)" and target="H3K4me3"]
|
 |
[1.72, 80.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF830ODB.bed.gz | 825.0 KB | 1aa0d5160cd2a0d3756b258b0328286d |
| ENCFF830ODB.bed.gz.dvc | 100.0 B | 0f3cd40ac1d8dd9f89c70a6ac97a7b89 |
| ENCFF830ODB.tabix.bed.gz | 348.93 KB | f0246816b1ffc819d62b6b5da3be44ad |
| ENCFF830ODB.tabix.bed.gz.dvc | 106.0 B | c7017268223d3bb05735c5a4be23a92f |
| ENCFF830ODB.tabix.bed.gz.tbi | 174.37 KB | 58bf7e32a1955c6f547ab002339b8a39 |
| ENCFF830ODB.tabix.bed.gz.tbi.dvc | 110.0 B | 751875e71ef5f7ef57cc084b34b687b4 |
| genomic_resource.yaml | 2.57 KB | 9592c1a40cbfeb8b39a5bcbf45ec924f |
| genomic_resource_original.yaml | 2.39 KB | 4c6e2a30e723bf7386b2f3248a77f0c3 |
| statistics/ |