Resource
| Id | Histone_ChIP-seq/ENCSR795VEN |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR795VEN [biosample_summary="Homo sapiens with nonobstructive coronary artery disease; liver tissue male adult (32 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (32 years) with nonobstructive coronary artery disease output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN757QZA|/analyses/ENCAN757QZA/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN757QZA|/analyses/ENCAN757QZA/} has in progress subobject document {37cf2538-7c34-4cd0-9bc2-92a9679d2cef|/documents/37cf2538-7c34-4cd0-9bc2-92a9679d2cef/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF623YQY|/files/ENCFF623YQY/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR795VEN | float |
Histone_ChIP-seq_ENCSR795VEN |
Histone_ChIP-seq ENCSR795VEN [biosample_summary="Homo sapiens with nonobstructive coronary artery disease; liver tissue male adult (32 years)" and target="H3K4me3"]
|
 |
[1.72, 80.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 39465473 | 1.23% | 29961 |
| chr1 | 3827415 | 1.54% | 2910 |
| chr2 | 2795446 | 1.15% | 2080 |
| chr3 | 2292954 | 1.16% | 1677 |
| chr4 | 1731008 | 0.91% | 1353 |
| chr5 | 1876218 | 1.03% | 1393 |
| chr6 | 2244825 | 1.31% | 1724 |
| chr7 | 1945429 | 1.22% | 1552 |
| chr8 | 1484960 | 1.02% | 1120 |
| chr9 | 1671308 | 1.21% | 1227 |
| chr10 | 1782593 | 1.33% | 1364 |
| chr11 | 2106067 | 1.56% | 1535 |
| chr12 | 2029938 | 1.52% | 1502 |
| chr13 | 842808 | 0.74% | 653 |
| chr14 | 1318742 | 1.23% | 983 |
| chr15 | 1235609 | 1.21% | 927 |
| chr16 | 1557590 | 1.72% | 1191 |
| chr17 | 2182682 | 2.62% | 1624 |
| chr18 | 729215 | 0.91% | 563 |
| chr19 | 2304862 | 3.93% | 1897 |
| chr20 | 996953 | 1.55% | 769 |
| chr21 | 385814 | 0.83% | 295 |
| chr22 | 870223 | 1.71% | 662 |
| chrX | 1206229 | 0.77% | 925 |
| chrY | 46585 | 0.08% | 35 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 29961 | 175 | 10221 | 1317.23 | 1060 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF830ODB.bed.gz | 825.0 KB | 1aa0d5160cd2a0d3756b258b0328286d |
| ENCFF830ODB.tabix.bed.gz | 348.93 KB | f0246816b1ffc819d62b6b5da3be44ad |
| ENCFF830ODB.tabix.bed.gz.tbi | 174.37 KB | 58bf7e32a1955c6f547ab002339b8a39 |
| genomic_resource.yaml | 2.57 KB | 9592c1a40cbfeb8b39a5bcbf45ec924f |
| statistics/ |