Resource
| Id | Histone_ChIP-seq/ENCSR792GCH |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR792GCH [biosample_summary="Homo sapiens H9" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN090CDR|/analyses/ENCAN090CDR/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF218GGH|/files/ENCFF218GGH/} processed by ChIP-seq ENCODE3 hg19 pipeline has 9213464 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF785XRM|/files/ENCFF785XRM/} processed by ChIP-seq ENCODE3 hg19 pipeline has 22949702 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR792GCH | float |
Histone_ChIP-seq_ENCSR792GCH |
Histone_ChIP-seq ENCSR792GCH [biosample_summary="Homo sapiens H9" and target="H3K27me3"]
|
 |
[1.78, 34.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 16030014 | 0.50% | 24215 |
| chr1 | 1454741 | 0.58% | 2302 |
| chr2 | 1213919 | 0.50% | 1690 |
| chr3 | 660454 | 0.33% | 1158 |
| chr4 | 810484 | 0.43% | 1162 |
| chr5 | 919422 | 0.51% | 1315 |
| chr6 | 989515 | 0.58% | 1403 |
| chr7 | 913964 | 0.57% | 1226 |
| chr8 | 666534 | 0.46% | 1063 |
| chr9 | 679632 | 0.49% | 1061 |
| chr10 | 961778 | 0.72% | 1312 |
| chr11 | 829434 | 0.61% | 1330 |
| chr12 | 921737 | 0.69% | 1274 |
| chr13 | 377629 | 0.33% | 574 |
| chr14 | 481166 | 0.45% | 760 |
| chr15 | 522443 | 0.51% | 736 |
| chr16 | 458435 | 0.51% | 716 |
| chr17 | 893235 | 1.07% | 1143 |
| chr18 | 325456 | 0.40% | 579 |
| chr19 | 449361 | 0.77% | 775 |
| chr20 | 431173 | 0.67% | 742 |
| chr21 | 123886 | 0.27% | 193 |
| chr22 | 478600 | 0.94% | 814 |
| chrX | 466829 | 0.30% | 886 |
| chrY | 187 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 24215 | 130 | 19294 | 661.99 | 364 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF183GOB.bed.gz | 539.68 KB | ef8c33d738252497497a11307e226db3 |
| ENCFF183GOB.tabix.bed.gz | 250.85 KB | d391d07662ae8469718cb3d92353243a |
| ENCFF183GOB.tabix.bed.gz.tbi | 97.08 KB | a054b1b77e5c0986a886d7c336f56fa1 |
| genomic_resource.yaml | 2.36 KB | 78fa2d61c2619c58df0fb709595d39a5 |
| statistics/ |