Resource
| Id | Histone_ChIP-seq/ENCSR791GCO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR791GCO [biosample_summary="Homo sapiens heart right ventricle tissue male adult (34 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (34 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN956OQL|/analyses/ENCAN956OQL/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF536UVY|/files/ENCFF536UVY/} processed by ChIP-seq ENCODE3 hg19 pipeline has 16820067 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR791GCO | float |
Histone_ChIP-seq_ENCSR791GCO |
Histone_ChIP-seq ENCSR791GCO [biosample_summary="Homo sapiens heart right ventricle tissue male adult (34 years)" and target="H3K4me3"]
|
 |
[1.72, 79.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 38777078 | 1.21% | 29224 |
| chr1 | 3801310 | 1.53% | 2854 |
| chr2 | 2643399 | 1.09% | 1953 |
| chr3 | 2205812 | 1.11% | 1622 |
| chr4 | 1658348 | 0.87% | 1256 |
| chr5 | 1918308 | 1.06% | 1400 |
| chr6 | 2297808 | 1.35% | 1726 |
| chr7 | 1909998 | 1.20% | 1486 |
| chr8 | 1502283 | 1.04% | 1139 |
| chr9 | 1605817 | 1.16% | 1216 |
| chr10 | 1713650 | 1.28% | 1292 |
| chr11 | 2058389 | 1.52% | 1470 |
| chr12 | 2018260 | 1.51% | 1495 |
| chr13 | 872907 | 0.76% | 673 |
| chr14 | 1243043 | 1.16% | 900 |
| chr15 | 1242795 | 1.22% | 920 |
| chr16 | 1446444 | 1.60% | 1104 |
| chr17 | 2135070 | 2.56% | 1600 |
| chr18 | 702006 | 0.87% | 516 |
| chr19 | 2377387 | 4.06% | 1974 |
| chr20 | 986480 | 1.53% | 721 |
| chr21 | 379997 | 0.81% | 299 |
| chr22 | 849542 | 1.67% | 648 |
| chrX | 1165816 | 0.75% | 931 |
| chrY | 42209 | 0.07% | 29 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 29224 | 190 | 14771 | 1326.89 | 1081 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF491YHG.bed.gz | 770.14 KB | 7ff27e3a5577d41c01e142d2458e4155 |
| ENCFF491YHG.tabix.bed.gz | 333.25 KB | 71216cdf77319daf93b8160c8db839d5 |
| ENCFF491YHG.tabix.bed.gz.tbi | 167.75 KB | 13282867e07b40b87c3c042e0d8d7caf |
| genomic_resource.yaml | 2.0 KB | 91ef6fd1ae4fbdcd9f5533a7deb37237 |
| statistics/ |