Histone_ChIP-seq_ENCSR790QWJ
Histone_ChIP-seq ENCSR790QWJ [biosample_summary="Homo sapiens KMS-11" and target="H4K20me1"]
×
| Id: | Histone_ChIP-seq/ENCSR790QWJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR790QWJ [biosamplesummary="Homo sapiens KMS-11" and target="H4K20me1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN291UQF|/analyses/ENCAN291UQF/} has in progress subobject document {ab4a78a8-8de2-408d-8411-c7e44d01904d|/documents/ab4a78a8-8de2-408d-8411-c7e44d01904d/} audit_internal_action: Released analysis {ENCAN291UQF|/analyses/ENCAN291UQF/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF123YHG|/files/ENCFF123YHG/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 24268161 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF901QZZ|/files/ENCFF901QZZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 14232565 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF901QZZ|/files/ENCFF901QZZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF901QZZ|/files/ENCFF901QZZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.39. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR790QWJ | float |
Histone_ChIP-seq_ENCSR790QWJ |
Histone_ChIP-seq ENCSR790QWJ [biosample_summary="Homo sapiens KMS-11" and target="H4K20me1"]
|
|
[1.72, 9.51] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF882SPY.bed.gz | 260.98 KB | 697cfbf96c67cd55890038b85285351f |
| ENCFF882SPY.bed.gz.dvc | 100.0 B | eacbdd53e897ba241b2d027bed8c4b41 |
| ENCFF882SPY.tabix.bed.gz | 124.0 KB | 2f8685bfa4581d04e976d9a366ec68da |
| ENCFF882SPY.tabix.bed.gz.dvc | 106.0 B | 611ddbe064e9fe523ebeb93ab52c65c6 |
| ENCFF882SPY.tabix.bed.gz.tbi | 44.68 KB | bf538eec46e8c9b5611775e2c832afbe |
| ENCFF882SPY.tabix.bed.gz.tbi.dvc | 109.0 B | 39b6e3cdc385f662b59eb3c713852bf7 |
| genomic_resource.yaml | 3.93 KB | ec4887738fe116d167b0691f53decc43 |
| genomic_resource_original.yaml | 3.82 KB | 3d552f443dd24c3d1b3bf9f58025393f |
| statistics/ |