Resource

Id Histone_ChIP-seq/ENCSR790EDQcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR790EDQ [biosample_summary="Homo sapiens OCI-LY1" and target="H3K4me2"]
Description
Labels
  • accession: ENCSR790EDQ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005907/
  • biosample_summary: Homo sapiens OCI-LY1
  • date_created: 2014-02-20T05:42:07.641749+00:00
  • date_released: 2014-07-11
  • doi: 10.17989/ENCSR790EDQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K4me2

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR790EDQ float

Histone_ChIP-seq_ENCSR790EDQ
Histone_ChIP-seq ENCSR790EDQ [biosample_summary="Homo sapiens OCI-LY1" and target="H3K4me2"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR790EDQ [1.69, 41.5]
n
74,906,548
mean
11.8
sd
6.08

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 749065482.33% 50899
chr1 6849836 2.75% 4595
chr2 5737000 2.37% 3893
chr3 4798410 2.42% 3260
chr4 3128866 1.64% 2209
chr5 3718757 2.05% 2403
chr6 4282407 2.51% 2802
chr7 4011075 2.52% 2906
chr8 3165602 2.18% 2168
chr9 3050374 2.20% 2109
chr10 3089300 2.31% 2085
chr11 3485139 2.58% 2209
chr12 3837114 2.88% 2561
chr13 1732491 1.51% 1153
chr14 2643513 2.47% 1755
chr15 2588614 2.54% 1699
chr16 2866026 3.17% 2044
chr17 3792313 4.55% 2610
chr18 1502080 1.87% 1023
chr19 3552783 6.06% 2483
chr20 2034777 3.16% 1427
chr21 771458 1.65% 571
chr22 1920189 3.78% 1312
chrX 2191262 1.40% 1516
chrY 157162 0.27% 106
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 50899 208 18959 1471.67 1026
global segment-length histogram

Files

Filename Size md5
ENCFF131DVJ.bed.gz 1.36 MB c85f7f23b35e53689c00adb7d3fd1cee
ENCFF131DVJ.tabix.bed.gz 581.84 KB 2bfeb42951cc38c64e7d83c4ae3f39cb
ENCFF131DVJ.tabix.bed.gz.tbi 191.99 KB 982c93cd30dd4adff9c035a88ad979f8
genomic_resource.yaml 1.59 KB 762ee70e0fd4c45235513e66a8baab1d
statistics/