Histone_ChIP-seq_ENCSR788WNE
Histone_ChIP-seq ENCSR788WNE [biosample_summary="Homo sapiens lower lobe of right lung tissue male adult (60 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR788WNE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR788WNE [biosamplesummary="Homo sapiens lower lobe of right lung tissue male adult (60 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (60 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN361WSA|/analyses/ENCAN361WSA/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF899JGZ|/files/ENCFF899JGZ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF899JGZ|/files/ENCFF899JGZ/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.50. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR788WNE | float |
Histone_ChIP-seq_ENCSR788WNE |
Histone_ChIP-seq ENCSR788WNE [biosample_summary="Homo sapiens lower lobe of right lung tissue male adult (60 years)" and target="H3K4me3"]
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[1.9, 81.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF926KAB.bed.gz | 812.7 KB | 85daa7e21a2d5146967f90b662101bcd |
| ENCFF926KAB.bed.gz.dvc | 100.0 B | 2e6464d97d32c4c18637b103c2c116bb |
| ENCFF926KAB.tabix.bed.gz | 355.51 KB | 4c55fcfaccd0c9f92b48292ce13497a5 |
| ENCFF926KAB.tabix.bed.gz.dvc | 106.0 B | 62522e9b7e5a9dcef10a263800c9aa00 |
| ENCFF926KAB.tabix.bed.gz.tbi | 181.42 KB | 2d4b92771cac772a1d07981bd39c0050 |
| ENCFF926KAB.tabix.bed.gz.tbi.dvc | 110.0 B | 539e0e2c454d810391f8955fe891b2d4 |
| genomic_resource.yaml | 2.81 KB | b0434627f26f34852d83d41fcb3efd70 |
| genomic_resource_original.yaml | 2.66 KB | 644b53fe21fe99c3a5f98bdf5a0fd3c5 |
| statistics/ |