Resource

Id Histone_ChIP-seq/ENCSR788EQLcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR788EQL [biosample_summary="Homo sapiens PC-3" and target="H3K4me2"]
Description
Labels
  • accession: ENCSR788EQL
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002074/
  • biosample_summary: Homo sapiens PC-3
  • date_created: 2014-02-20T05:41:15.992728+00:00
  • date_released: 2016-11-09
  • doi: 10.17989/ENCSR788EQL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K4me2

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR788EQL float

Histone_ChIP-seq_ENCSR788EQL
Histone_ChIP-seq ENCSR788EQL [biosample_summary="Homo sapiens PC-3" and target="H3K4me2"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR788EQL [1.49, 31.7]
n
121,037,597
mean
9.79
sd
5.69

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1210375973.76% 101652
chr1 11973397 4.81% 9702
chr2 9997248 4.13% 8660
chr3 8049767 4.06% 6935
chr4 6051332 3.18% 5479
chr5 6757246 3.72% 5898
chr6 7363613 4.31% 6216
chr7 6135358 3.85% 5299
chr8 5852183 4.03% 5019
chr9 4507789 3.26% 3813
chr10 5754775 4.30% 4757
chr11 6218480 4.60% 5000
chr12 6233760 4.68% 5071
chr13 2920182 2.55% 2636
chr14 4120158 3.85% 3361
chr15 3841079 3.77% 3232
chr16 3156618 3.49% 2566
chr17 5253732 6.31% 3988
chr18 2502534 3.11% 2241
chr19 4037332 6.89% 3010
chr20 3294173 5.11% 2762
chr21 1462891 3.13% 1261
chr22 1816225 3.57% 1466
chrX 3737725 2.40% 3280
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 101652 203 22450 1190.71 860
global segment-length histogram

Files

Filename Size md5
ENCFF904TGH.bed.gz 2.69 MB 970dd10e694d934854bfa80eeeddf8e4
ENCFF904TGH.tabix.bed.gz 1.11 MB a44ef528ac1cdf53a7b0bf5479ff37a7
ENCFF904TGH.tabix.bed.gz.tbi 357.65 KB d0e851cf875d2c67587c966f94e5d1bf
genomic_resource.yaml 1.58 KB 4b546a0e9afc5903b1de6501c24399ea
statistics/