Resource

Id Histone_ChIP-seq/ENCSR787QZEcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR787QZE [biosample_summary="Homo sapiens with Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR787QZE
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens with Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)
  • date_created: 2021-01-28T04:10:58.491016+00:00
  • date_released: 2021-05-06
  • doi: 10.17989/ENCSR787QZE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with Cognitive impairment
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR787QZE float

Histone_ChIP-seq_ENCSR787QZE
Histone_ChIP-seq ENCSR787QZE [biosample_summary="Homo sapiens with Cognitive impairment; dorsolateral prefrontal cortex tissue female adult (90 or above years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR787QZE [1.76, 71.2]
n
71,892,560
mean
25.9
sd
17.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 718925602.23% 44035
chr1 6892867 2.77% 4148
chr2 5263627 2.17% 3314
chr3 4387958 2.21% 2622
chr4 3200988 1.68% 2023
chr5 3750179 2.07% 2274
chr6 4350187 2.55% 2655
chr7 3559163 2.23% 2310
chr8 2871060 1.98% 1754
chr9 3036769 2.19% 1939
chr10 3287087 2.46% 2050
chr11 3735818 2.77% 2205
chr12 3689389 2.77% 2159
chr13 1846703 1.61% 1200
chr14 2313392 2.16% 1394
chr15 2217777 2.17% 1412
chr16 2605395 2.88% 1633
chr17 3731143 4.48% 2183
chr18 1500630 1.87% 966
chr19 3739921 6.38% 2166
chr20 1771242 2.75% 1115
chr21 763880 1.64% 499
chr22 1414406 2.78% 860
chrX 1962979 1.26% 1154
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 44035 235 35980 1632.62 1129
global segment-length histogram

Files

Filename Size md5
ENCFF825JIZ.bed.gz 1.1 MB a02dd5736454730623e22aa24fbb614d
ENCFF825JIZ.tabix.bed.gz 495.6 KB 3342a9d3326fc6d9579f2279fd94ee31
ENCFF825JIZ.tabix.bed.gz.tbi 235.59 KB b63ba547eb7815be5363de58bdebd390
genomic_resource.yaml 1.74 KB 86478d98b79357a2bea50ba0902bd4fd
statistics/