Resource

Id Histone_ChIP-seq/ENCSR787CAJcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR787CAJ [biosample_summary="Homo sapiens chorion tissue female embryo (40 weeks)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR787CAJ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0003124/
  • biosample_summary: Homo sapiens chorion tissue female embryo (40 weeks)
  • date_created: 2017-03-22T16:16:44.708912+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR787CAJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (40 weeks)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR787CAJ float

Histone_ChIP-seq_ENCSR787CAJ
Histone_ChIP-seq ENCSR787CAJ [biosample_summary="Homo sapiens chorion tissue female embryo (40 weeks)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR787CAJ [1.99, 37.8]
n
21,533,108
mean
12.9
sd
5.99

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 215331080.67% 19722
chr1 2158934 0.87% 1935
chr2 1462537 0.60% 1324
chr3 1204956 0.61% 1079
chr4 854815 0.45% 772
chr5 1005990 0.55% 886
chr6 1268765 0.74% 1151
chr7 1052878 0.66% 979
chr8 774511 0.53% 672
chr9 895919 0.65% 828
chr10 903968 0.68% 790
chr11 1179407 0.87% 1051
chr12 1126727 0.85% 1028
chr13 437953 0.38% 403
chr14 731907 0.68% 673
chr15 676242 0.66% 633
chr16 889248 0.98% 810
chr17 1298138 1.56% 1167
chr18 330027 0.41% 312
chr19 1529185 2.61% 1479
chr20 542262 0.84% 493
chr21 198769 0.43% 188
chr22 478154 0.94% 464
chrX 531816 0.34% 605
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 19722 205 9940 1091.83 953
global segment-length histogram

Files

Filename Size md5
ENCFF656DIN.bed.gz 482.1 KB 4365095d4fac13013c601f3f67b403e2
ENCFF656DIN.tabix.bed.gz 219.81 KB 118847a5e4bbadcc5acbdf6c3e4518b0
ENCFF656DIN.tabix.bed.gz.tbi 125.36 KB 83e1e4640a91e71117b5ad952e9c7984
genomic_resource.yaml 2.0 KB f3594ba3cf5fff6b81fe90f0f9b07233
statistics/