Resource
| Id | Histone_ChIP-seq/ENCSR786ESI |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR786ESI [biosample_summary="Homo sapiens foreskin fibroblast male newborn" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male newborn output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN042QOE|/analyses/ENCAN042QOE/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF553JPL|/files/ENCFF553JPL/} processed by ChIP-seq ENCODE3 hg19 pipeline has 28558982 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR786ESI | float |
Histone_ChIP-seq_ENCSR786ESI |
Histone_ChIP-seq ENCSR786ESI [biosample_summary="Homo sapiens foreskin fibroblast male newborn" and target="H3K27me3"]
|
 |
[1.77, 18.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 35808386 | 1.11% | 65306 |
| chr1 | 4221586 | 1.70% | 7506 |
| chr2 | 3113592 | 1.29% | 5800 |
| chr3 | 1829813 | 0.92% | 3622 |
| chr4 | 920680 | 0.48% | 1632 |
| chr5 | 1673620 | 0.92% | 3105 |
| chr6 | 1672290 | 0.98% | 3047 |
| chr7 | 1588779 | 1.00% | 2814 |
| chr8 | 1357140 | 0.94% | 2512 |
| chr9 | 1726533 | 1.25% | 3047 |
| chr10 | 2036490 | 1.52% | 3732 |
| chr11 | 2383390 | 1.76% | 4397 |
| chr12 | 1461529 | 1.10% | 2648 |
| chr13 | 692540 | 0.61% | 1262 |
| chr14 | 945742 | 0.88% | 1725 |
| chr15 | 1475874 | 1.45% | 2785 |
| chr16 | 1211327 | 1.34% | 2304 |
| chr17 | 2679057 | 3.22% | 4531 |
| chr18 | 530025 | 0.66% | 1021 |
| chr19 | 1233512 | 2.10% | 2107 |
| chr20 | 1478352 | 2.29% | 2645 |
| chr21 | 415729 | 0.89% | 799 |
| chr22 | 1006744 | 1.98% | 1968 |
| chrX | 152669 | 0.10% | 294 |
| chrY | 1373 | <0.01% | 3 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 65306 | 180 | 17248 | 548.32 | 378 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF381RRC.bed.gz | 1.29 MB | 05c01dd23470eb993e65fecf71e7c705 |
| ENCFF381RRC.tabix.bed.gz | 663.52 KB | c0bc2a75d0a85237d6a8b012020776e5 |
| ENCFF381RRC.tabix.bed.gz.tbi | 167.56 KB | a75212709a1485733527f3bbf7fc344e |
| genomic_resource.yaml | 1.95 KB | 79aba4f72f0cba56f569943d9d28bcd8 |
| statistics/ |