Histone_ChIP-seq_ENCSR783AXV
Histone_ChIP-seq ENCSR783AXV [biosample_summary="Homo sapiens smooth muscle cell originated from H9" and target="H3K4me2"]
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| Id: | Histone_ChIP-seq/ENCSR783AXV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR783AXV [biosamplesummary="Homo sapiens smooth muscle cell originated from H9" and target="H3K4me2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female embryo (5 days) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN734ZEK|/analyses/ENCAN734ZEK/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF553PRV|/files/ENCFF553PRV/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF553PRV|/files/ENCFF553PRV/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.38. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR783AXV | float |
Histone_ChIP-seq_ENCSR783AXV |
Histone_ChIP-seq ENCSR783AXV [biosample_summary="Homo sapiens smooth muscle cell originated from H9" and target="H3K4me2"]
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[1.19, 25.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF329ARL.bed.gz | 3.07 MB | e98e61eafbbf804117b5bf035ca120f5 |
| ENCFF329ARL.bed.gz.dvc | 101.0 B | 1263ad87ca19647492aa68e59c1a0557 |
| ENCFF329ARL.tabix.bed.gz | 1.31 MB | 20782a1d64847f56af83adad13cda774 |
| ENCFF329ARL.tabix.bed.gz.dvc | 107.0 B | 61e5cf99833cce2169375151000f0c25 |
| ENCFF329ARL.tabix.bed.gz.tbi | 403.56 KB | ad555cb354b13085a6da691dbe7f5d6d |
| ENCFF329ARL.tabix.bed.gz.tbi.dvc | 110.0 B | 12357a0ecc9840a088db28bf4e946060 |
| genomic_resource.yaml | 2.76 KB | 77a059de26bbf1abed27d8caf92a2ab1 |
| genomic_resource_original.yaml | 2.63 KB | 3c408a045ec8b5b615f5a84133db115e |
| statistics/ |