Resource
| Id | Histone_ChIP-seq/ENCSR782NOO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR782NOO [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (37 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (37 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN389LOY|/analyses/ENCAN389LOY/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN389LOY|/analyses/ENCAN389LOY/} has in progress subobject document {9b96f64c-23d4-46fc-a2ed-c0833c6a12ad|/documents/9b96f64c-23d4-46fc-a2ed-c0833c6a12ad/} audit_not_compliant: Processed alignments file {ENCFF818TTU|/files/ENCFF818TTU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 23996524 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR782NOO | float |
Histone_ChIP-seq_ENCSR782NOO |
Histone_ChIP-seq ENCSR782NOO [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (37 years)" and target="H3K36me3"]
|
 |
[1.86, 18] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 71615398 | 2.23% | 116147 |
| chr1 | 7375885 | 2.96% | 11373 |
| chr2 | 5663673 | 2.34% | 9226 |
| chr3 | 4468113 | 2.25% | 7469 |
| chr4 | 2383129 | 1.25% | 4258 |
| chr5 | 3825873 | 2.11% | 6026 |
| chr6 | 3506729 | 2.05% | 5719 |
| chr7 | 3054098 | 1.92% | 5287 |
| chr8 | 2200399 | 1.52% | 3881 |
| chr9 | 3032325 | 2.19% | 4745 |
| chr10 | 3002089 | 2.24% | 4950 |
| chr11 | 3878145 | 2.87% | 5915 |
| chr12 | 4032947 | 3.03% | 6405 |
| chr13 | 1389814 | 1.22% | 2494 |
| chr14 | 2726421 | 2.55% | 4256 |
| chr15 | 2494694 | 2.45% | 4285 |
| chr16 | 3174450 | 3.51% | 5068 |
| chr17 | 4444476 | 5.34% | 6889 |
| chr18 | 1089987 | 1.36% | 1912 |
| chr19 | 3716816 | 6.34% | 5746 |
| chr20 | 2298394 | 3.57% | 3576 |
| chr21 | 856080 | 1.83% | 1447 |
| chr22 | 2001024 | 3.94% | 2991 |
| chrX | 941756 | 0.60% | 2078 |
| chrY | 58081 | 0.10% | 151 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 116147 | 150 | 14640 | 616.59 | 448 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF179WTZ.bed.gz | 2.21 MB | ce63d9867dd7bd564a302f24e1515239 |
| ENCFF179WTZ.tabix.bed.gz | 1.09 MB | f27b813a8d78ca5735ddbaa9df6e8b0b |
| ENCFF179WTZ.tabix.bed.gz.tbi | 159.19 KB | de5de842a53b01ba4127ed70d0c753cc |
| genomic_resource.yaml | 2.25 KB | bd6cf437bf72336f1dfd335cf3a93f82 |
| statistics/ |