Histone_ChIP-seq_ENCSR780XZD
Histone_ChIP-seq ENCSR780XZD [biosample_summary="Homo sapiens BE2C" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR780XZD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR780XZD [biosamplesummary="Homo sapiens BE2C" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN398BZU|/analyses/ENCAN398BZU/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF598CZS|/files/ENCFF598CZS/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF598CZS|/files/ENCFF598CZS/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.23. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF520FHH|/files/ENCFF520FHH/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF520FHH|/files/ENCFF520FHH/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.93. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR780XZD | float |
Histone_ChIP-seq_ENCSR780XZD |
Histone_ChIP-seq ENCSR780XZD [biosample_summary="Homo sapiens BE2C" and target="H3K27me3"]
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[1.06, 16.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF906TXM.bed.gz | 1.14 MB | 052be0eaee59c4de276e154bd75b78d7 |
| ENCFF906TXM.bed.gz.dvc | 101.0 B | 98c8f0369d906a7e066b077ad634e619 |
| ENCFF906TXM.tabix.bed.gz | 563.36 KB | 969456a7435fa0a0e2fb5ab2b439ac11 |
| ENCFF906TXM.tabix.bed.gz.dvc | 106.0 B | ab92bce29a6663cc62267214a805c172 |
| ENCFF906TXM.tabix.bed.gz.tbi | 143.19 KB | 1ad2b9b7487a217b9f7c4c4dc2d2f65c |
| ENCFF906TXM.tabix.bed.gz.tbi.dvc | 110.0 B | c9c3709f33ec44d0a47d0b6c0ec46d86 |
| genomic_resource.yaml | 4.0 KB | ecaf364059ba5c60e264bd72e6bdc148 |
| genomic_resource_original.yaml | 3.89 KB | 289713f9c3c7b32144f0a1b73516ddca |
| statistics/ |