Histone_ChIP-seq_ENCSR780FXX
Histone_ChIP-seq ENCSR780FXX [biosample_summary="Homo sapiens brain tissue female embryo (17 weeks)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR780FXX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR780FXX [biosamplesummary="Homo sapiens brain tissue female embryo (17 weeks)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female embryo (17 weeks) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN239CVM|/analyses/ENCAN239CVM/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF885QLM|/files/ENCFF885QLM/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF885QLM|/files/ENCFF885QLM/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.06. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR780FXX | float |
Histone_ChIP-seq_ENCSR780FXX |
Histone_ChIP-seq ENCSR780FXX [biosample_summary="Homo sapiens brain tissue female embryo (17 weeks)" and target="H3K4me3"]
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[1.8, 86.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF590UXV.bed.gz | 737.15 KB | b7997d923f952e6f83a3b3d0d43f3292 |
| ENCFF590UXV.bed.gz.dvc | 100.0 B | 189bfb95dd06681fd39dae3b9867b79b |
| ENCFF590UXV.tabix.bed.gz | 347.64 KB | 9252c3dd9b93155680896382668f5177 |
| ENCFF590UXV.tabix.bed.gz.dvc | 106.0 B | 52ae95fd0e5257571698b8738e2886bf |
| ENCFF590UXV.tabix.bed.gz.tbi | 184.22 KB | 502f0019a5651f7f542d28ba94290ea6 |
| ENCFF590UXV.tabix.bed.gz.tbi.dvc | 110.0 B | b262e1b3d8a2b36be6739ac6c6b78d39 |
| genomic_resource.yaml | 2.79 KB | 58719cde7ad1cfb7271fc8c040324f22 |
| genomic_resource_original.yaml | 2.65 KB | 94ee5586a1b560afde104955cc111e2e |
| statistics/ |