Histone_ChIP-seq_ENCSR778VGY
Histone_ChIP-seq ENCSR778VGY [biosample_summary="Homo sapiens ACC112" and target="H3K4me3"]
×
| Id: | Histone_ChIP-seq/ENCSR778VGY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR778VGY [biosamplesummary="Homo sapiens ACC112" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN982KEG|/analyses/ENCAN982KEG/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF785BFN|/files/ENCFF785BFN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 11265212 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF785BFN|/files/ENCFF785BFN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF785BFN|/files/ENCFF785BFN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.79. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR778VGY | float |
Histone_ChIP-seq_ENCSR778VGY |
Histone_ChIP-seq ENCSR778VGY [biosample_summary="Homo sapiens ACC112" and target="H3K4me3"]
|
|
[1.49, 55.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF712OJP.bed.gz | 1.66 MB | b13a58d2950eb2e70311c57c515eac6d |
| ENCFF712OJP.bed.gz.dvc | 101.0 B | 9a005c5d92fb451855a4631e9976a246 |
| ENCFF712OJP.tabix.bed.gz | 708.51 KB | d0676542f5033d3d3cba9e9129654626 |
| ENCFF712OJP.tabix.bed.gz.dvc | 106.0 B | b0ddc924729034236183c15db4a42af9 |
| ENCFF712OJP.tabix.bed.gz.tbi | 289.76 KB | 8f27cc8ffab050c084dff8242731fdce |
| ENCFF712OJP.tabix.bed.gz.tbi.dvc | 110.0 B | 78f82e9e5e6d8093a065f25d9151ac3f |
| genomic_resource.yaml | 3.17 KB | c407e9948445be556c487f8ce9b5ef4b |
| genomic_resource_original.yaml | 3.06 KB | 530ee32a53d6b2c632b688727ff8c7fe |
| statistics/ |