Histone_ChIP-seq_ENCSR776EAH
Histone_ChIP-seq ENCSR776EAH [biosample_summary="Homo sapiens gastrocnemius medialis tissue female adult (53 years)" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR776EAH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR776EAH [biosamplesummary="Homo sapiens gastrocnemius medialis tissue female adult (53 years)" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN536ORR|/analyses/ENCAN536ORR/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF107CVP|/files/ENCFF107CVP/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF107CVP|/files/ENCFF107CVP/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.91. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR776EAH | float |
Histone_ChIP-seq_ENCSR776EAH |
Histone_ChIP-seq ENCSR776EAH [biosample_summary="Homo sapiens gastrocnemius medialis tissue female adult (53 years)" and target="H3K4me1"]
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[1.61, 12.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF762MCN.bed.gz | 2.41 MB | 4696f1d30fd8b95f125d36ec8a106fad |
| ENCFF762MCN.bed.gz.dvc | 101.0 B | 740b153be8a1ac0efd2b428143cb2362 |
| ENCFF762MCN.tabix.bed.gz | 1.11 MB | e4ec396c043d9ae3af448ff05c201a5e |
| ENCFF762MCN.tabix.bed.gz.dvc | 107.0 B | 7eb0ef561a198dee07d063e53880ea5b |
| ENCFF762MCN.tabix.bed.gz.tbi | 258.25 KB | dc456d4418f4c8f51d3b841c1d3cb663 |
| ENCFF762MCN.tabix.bed.gz.tbi.dvc | 110.0 B | c2252ab4b306584033106ab1fbb3572a |
| genomic_resource.yaml | 2.8 KB | e9d8ebe47095d7bf62dce57368d41db4 |
| genomic_resource_original.yaml | 2.65 KB | 1bf297a9cc17d80fb3f773b20699b6ec |
| statistics/ |