Resource

Id Histone_ChIP-seq/ENCSR775TAIcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR775TAI [biosample_summary="Homo sapiens A549" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR775TAI
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0001086/
  • biosample_summary: Homo sapiens A549
  • date_created: 2016-05-25T23:24:02.623259+00:00
  • date_released: 2016-07-21
  • doi: 10.17989/ENCSR775TAI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR775TAI float

Histone_ChIP-seq_ENCSR775TAI
Histone_ChIP-seq ENCSR775TAI [biosample_summary="Homo sapiens A549" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR775TAI [1.59, 10.4]
n
42,869,991
mean
3.51
sd
0.995

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 428699911.33% 63293
chr1 2271247 0.91% 3562
chr2 4549631 1.88% 7750
chr3 1837463 0.93% 3086
chr4 916864 0.48% 1566
chr5 2503123 1.38% 4109
chr6 917780 0.54% 1612
chr7 2613126 1.64% 4069
chr8 2607585 1.80% 4192
chr9 2015835 1.46% 2908
chr10 2088147 1.56% 3272
chr11 1521537 1.13% 2403
chr12 2400366 1.80% 3647
chr13 354400 0.31% 662
chr14 1164888 1.09% 1885
chr15 1487519 1.46% 2339
chr16 1279840 1.42% 1768
chr17 1691936 2.03% 2337
chr18 410860 0.51% 665
chr19 7864905 13.42% 7590
chr20 1262056 1.96% 1916
chr21 229591 0.49% 400
chr22 307701 0.61% 515
chrX 567332 0.36% 1029
chrY 6259 0.01% 11
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 63293 198 23205 677.33 458
global segment-length histogram

Files

Filename Size md5
ENCFF164FDB.bed.gz 1.27 MB 5e61aad5562dc66ebad8932301587d31
ENCFF164FDB.tabix.bed.gz 638.4 KB f42f52e2ef8b4c1d9c713401ab568304
ENCFF164FDB.tabix.bed.gz.tbi 228.62 KB 7756ac2ea7e57ac794fe8ebb18b14c1b
genomic_resource.yaml 1.59 KB 126c50afc94411fd4ff931f003323c86
statistics/