Resource
| Id | Histone_ChIP-seq/ENCSR775GZI |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR775GZI [biosample_summary="Homo sapiens HUES48" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN700VCV|/analyses/ENCAN700VCV/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN700VCV|/analyses/ENCAN700VCV/} has in progress subobject document {d8c7b396-b0d3-4e5b-9a6b-e1bac7bf80c0|/documents/d8c7b396-b0d3-4e5b-9a6b-e1bac7bf80c0/} audit_not_compliant: Processed alignments file {ENCFF822VVN|/files/ENCFF822VVN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 30926287 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF022AIU|/files/ENCFF022AIU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 21653155 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR775GZI | float |
Histone_ChIP-seq_ENCSR775GZI |
Histone_ChIP-seq ENCSR775GZI [biosample_summary="Homo sapiens HUES48" and target="H3K36me3"]
|
 |
[1.69, 23.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 154999692 | 4.82% | 125731 |
| chr1 | 15568342 | 6.25% | 12101 |
| chr2 | 11821203 | 4.88% | 9419 |
| chr3 | 9515121 | 4.80% | 7826 |
| chr4 | 6839839 | 3.60% | 5702 |
| chr5 | 8460778 | 4.66% | 6550 |
| chr6 | 7377928 | 4.32% | 5949 |
| chr7 | 7351836 | 4.61% | 6362 |
| chr8 | 5728623 | 3.95% | 4747 |
| chr9 | 6443877 | 4.66% | 5246 |
| chr10 | 6317186 | 4.72% | 5017 |
| chr11 | 7647357 | 5.66% | 5992 |
| chr12 | 8693228 | 6.52% | 6871 |
| chr13 | 3418598 | 2.99% | 2950 |
| chr14 | 5249996 | 4.90% | 4347 |
| chr15 | 5603629 | 5.49% | 4483 |
| chr16 | 6029616 | 6.67% | 4734 |
| chr17 | 7990312 | 9.60% | 6443 |
| chr18 | 2775156 | 3.45% | 2401 |
| chr19 | 7663158 | 13.07% | 6592 |
| chr20 | 4296891 | 6.67% | 3329 |
| chr21 | 1756273 | 3.76% | 1292 |
| chr22 | 3546196 | 6.98% | 2889 |
| chrX | 4904549 | 3.14% | 4489 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 125731 | 168 | 56498 | 1232.79 | 719 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF716JGC.bed.gz | 2.7 MB | 85bf5325cb90316ffa2d8f639c8adf25 |
| ENCFF716JGC.tabix.bed.gz | 1.26 MB | b6a942bbee010e965ff6f0e9b90730a9 |
| ENCFF716JGC.tabix.bed.gz.tbi | 156.58 KB | c9ff4593fa99830626f63412bd2eaf43 |
| genomic_resource.yaml | 2.61 KB | 008e1dc83d4004395c252b8ed6a0657f |
| statistics/ |