Resource

Id Histone_ChIP-seq/ENCSR774NRDcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR774NRD [biosample_summary="Homo sapiens sigmoid colon tissue male adult (54 years)" and target="H3K9me3"]
Description
Labels
  • accession: ENCSR774NRD
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001159/
  • biosample_summary: Homo sapiens sigmoid colon tissue male adult (54 years)
  • date_created: 2017-12-06T21:01:44.002389+00:00
  • date_released: 2019-08-01
  • doi: 10.17989/ENCSR774NRD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:
  • target: H3K9me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR774NRD float

Histone_ChIP-seq_ENCSR774NRD
Histone_ChIP-seq ENCSR774NRD [biosample_summary="Homo sapiens sigmoid colon tissue male adult (54 years)" and target="H3K9me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR774NRD [1.27, 9.82]
n
7,557,351
mean
3.91
sd
1.13

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 75573510.23% 15730
chr1 413586 0.17% 968
chr1_KI270709v1_random 2948 4.41% 5
chr2 355370 0.15% 915
chr2_KI270716v1_random 370 0.24% 1
chr3 311274 0.16% 774
chr4 384732 0.20% 859
chr4_GL000008v2_random 4094 1.95% 3
chr5 612852 0.34% 1199
chr5_GL000208v1_random 598 0.65% 2
chr6 244084 0.14% 645
chr7 464210 0.29% 1020
chr8 266975 0.18% 647
chr9 258629 0.19% 537
chr9_KI270719v1_random 2217 1.25% 6
chr10 375700 0.28% 850
chr11 319133 0.24% 757
chr12 400282 0.30% 812
chr13 122996 0.11% 345
chr14 149667 0.14% 389
chr14_GL000009v2_random 428 0.21% 2
chr14_GL000194v1_random 407 0.21% 1
chr14_GL000225v1_random 1201 0.57% 5
chr14_KI270722v1_random 2526 1.30% 6
chr14_KI270723v1_random 189 0.50% 1
chr14_KI270725v1_random 144 0.08% 1
chr15 198803 0.19% 382
chr16 236065 0.26% 491
chr17 138224 0.17% 283
chr17_GL000205v2_random 2390 1.29% 7
chr17_KI270729v1_random 14735 5.25% 37
chr17_KI270730v1_random 6107 5.43% 15
chr18 103206 0.13% 243
chr19 1612333 2.75% 2233
chr20 136340 0.21% 349
chr21 162600 0.35% 338
chr22 86876 0.17% 210
chr22_KI270732v1_random 1475 3.55% 2
chr22_KI270733v1_random 2409 1.34% 10
chr22_KI270735v1_random 3735 8.72% 6
chr22_KI270736v1_random 21639 11.89% 39
chr22_KI270738v1_random 2542 2.56% 8
chrUn_GL000216v2 20032 11.34% 42
chrUn_GL000218v1 400 0.25% 1
chrUn_GL000219v1 3888 2.17% 7
chrUn_GL000224v1 1515 0.84% 3
chrUn_KI270429v1 172 12.64% 1
chrUn_KI270435v1 1304 1.40% 4
chrUn_KI270438v1 9229 8.20% 25
chrUn_KI270442v1 41349 10.55% 95
chrUn_KI270465v1 231 13.02% 1
chrUn_KI270466v1 301 24.41% 1
chrUn_KI270467v1 296 7.55% 1
chrUn_KI270512v1 964 4.25% 3
chrUn_KI270518v1 151 6.91% 1
chrUn_KI270519v1 2480 1.80% 8
chrUn_KI270538v1 304 0.33% 1
chrUn_KI270589v1 1400 3.15% 4
chrUn_KI270590v1 957 20.43% 2
chrUn_KI270591v1 131 2.26% 1
chrUn_KI270744v1 1325 0.79% 4
chrUn_KI270746v1 191 0.29% 1
chrUn_KI270747v1 728 0.37% 1
chrUn_KI270749v1 977 0.62% 2
chrUn_KI270750v1 311 0.21% 1
chrUn_KI270751v1 1247 0.83% 3
chrUn_KI270754v1 115 0.29% 1
chrUn_KI270756v1 805 1.01% 2
chrUn_KI270757v1 2430 3.41% 7
chrX 24543 0.02% 65
chrY 15484 0.03% 39
3296 contigs with no values (123548631 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 15730 110 19192 480.44 364
global segment-length histogram

Files

Filename Size md5
ENCFF199EVV.bed.gz 304.35 KB 7e7666a391b893b6534058f95eeea133
ENCFF199EVV.tabix.bed.gz 156.31 KB cbb219573b3db56792ef4e4fa9e0c26e
ENCFF199EVV.tabix.bed.gz.tbi 90.2 KB e7caf0eeda9a6ffc52007b536c581973
genomic_resource.yaml 1.5 KB 3dac501bf6cf5114d32963130d5115ed
statistics/