Resource

Id Histone_ChIP-seq/ENCSR774IHJcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR774IHJ [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (78 years)" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR774IHJ
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0009834/
  • biosample_summary: Homo sapiens dorsolateral prefrontal cortex tissue male adult (78 years)
  • date_created: 2021-01-28T04:10:50.584558+00:00
  • date_released: 2021-05-06
  • doi: 10.17989/ENCSR774IHJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (78 years)
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR774IHJ float

Histone_ChIP-seq_ENCSR774IHJ
Histone_ChIP-seq ENCSR774IHJ [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (78 years)" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR774IHJ [1.78, 41]
n
48,819,295
mean
16.8
sd
8.35

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 488192951.52% 29694
chr1 4735188 1.90% 2850
chr2 3392630 1.40% 2039
chr3 2903091 1.46% 1661
chr4 1994580 1.05% 1142
chr5 2466492 1.36% 1415
chr6 2797851 1.64% 1643
chr7 2319800 1.46% 1490
chr8 1967916 1.36% 1179
chr9 1995634 1.44% 1239
chr10 2099515 1.57% 1289
chr11 2659618 1.97% 1561
chr12 2591658 1.94% 1516
chr13 1079481 0.94% 662
chr14 1582253 1.48% 919
chr15 1542208 1.51% 941
chr16 1892715 2.10% 1209
chr17 2682856 3.22% 1637
chr18 899812 1.12% 569
chr19 2985183 5.09% 1955
chr20 1277468 1.98% 791
chr21 460745 0.99% 296
chr22 1112916 2.19% 737
chrX 1333181 0.85% 927
chrY 46504 0.08% 27
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 29694 210 33128 1644.08 1293
global segment-length histogram

Files

Filename Size md5
ENCFF196MXR.bed.gz 684.71 KB a21a4c21a997f46911d40fc5b87f460b
ENCFF196MXR.tabix.bed.gz 323.1 KB 6b5c8b12037409e9ebb03a2936493ddd
ENCFF196MXR.tabix.bed.gz.tbi 171.92 KB 4469b558f98b8bc259abbfbfedbad230
genomic_resource.yaml 1.56 KB 03d4f8481d1fa008e15a6219e34a1244
statistics/