Histone_ChIP-seq_ENCSR774CFO
Histone_ChIP-seq ENCSR774CFO [biosample_summary="Homo sapiens body of pancreas tissue male adult (54 years)" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR774CFO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR774CFO [biosamplesummary="Homo sapiens body of pancreas tissue male adult (54 years)" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (54 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN653SVL|/analyses/ENCAN653SVL/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF276TZX|/files/ENCFF276TZX/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF276TZX|/files/ENCFF276TZX/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 5.76. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR774CFO | float |
Histone_ChIP-seq_ENCSR774CFO |
Histone_ChIP-seq ENCSR774CFO [biosample_summary="Homo sapiens body of pancreas tissue male adult (54 years)" and target="H3K27me3"]
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[1.25, 8.04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF946OTT.bed.gz | 193.88 KB | 16c8c07a0ff53db1a1a854602f7b04f1 |
| ENCFF946OTT.bed.gz.dvc | 100.0 B | cf75928d5615cc9e35e2840ea08bd473 |
| ENCFF946OTT.tabix.bed.gz | 99.02 KB | e427c10c3c3783ec076ab5cff148d78d |
| ENCFF946OTT.tabix.bed.gz.dvc | 106.0 B | 9916c8b284893139fe644f7956a45e1e |
| ENCFF946OTT.tabix.bed.gz.tbi | 57.17 KB | 8ab5b71af3f9e2548e36759b0441678b |
| ENCFF946OTT.tabix.bed.gz.tbi.dvc | 109.0 B | f8c960d45260d6bab141f7ef8209f0b5 |
| genomic_resource.yaml | 2.77 KB | 5ff8d1715e9146f91041ab91ffb22e40 |
| genomic_resource_original.yaml | 2.62 KB | 7951cf49d8a4866dd0e2104028c3786e |
| statistics/ |