Histone_ChIP-seq_ENCSR771QCM
Histone_ChIP-seq ENCSR771QCM [biosample_summary="Homo sapiens SU-DHL-6" and target="H3F3A"]
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| Id: | Histone_ChIP-seq/ENCSR771QCM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR771QCM [biosamplesummary="Homo sapiens SU-DHL-6" and target="H3F3A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN669QQW|/analyses/ENCAN669QQW/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF033JLT|/files/ENCFF033JLT/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 23560132 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3F3A-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF559HLS|/files/ENCFF559HLS/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 20740621 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3F3A-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF033JLT|/files/ENCFF033JLT/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF033JLT|/files/ENCFF033JLT/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.79. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR771QCM | float |
Histone_ChIP-seq_ENCSR771QCM |
Histone_ChIP-seq ENCSR771QCM [biosample_summary="Homo sapiens SU-DHL-6" and target="H3F3A"]
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[1.64, 15.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF046FWB.bed.gz | 1.33 MB | 002d4ffa74fc065901d0c7ecec16f271 |
| ENCFF046FWB.bed.gz.dvc | 101.0 B | 9b623e21ce262eb4d55cd7df4c69bc34 |
| ENCFF046FWB.tabix.bed.gz | 614.79 KB | 8706aa9eb665709e69e2dea72c2f7af7 |
| ENCFF046FWB.tabix.bed.gz.dvc | 106.0 B | 92ef3f8a20d5362b1c1ada4b8d565eaa |
| ENCFF046FWB.tabix.bed.gz.tbi | 155.55 KB | 200bc33b2f585288ae066818bcb9c4c7 |
| ENCFF046FWB.tabix.bed.gz.tbi.dvc | 110.0 B | b78b7411cfe281cba1701a01c187309e |
| genomic_resource.yaml | 3.77 KB | ab352ce0f2c749f1207ef21d3197a7e2 |
| genomic_resource_original.yaml | 3.66 KB | fc169bad8e02c029583fe3ce133e74a0 |
| statistics/ |