Histone_ChIP-seq_ENCSR770WSE
Histone_ChIP-seq ENCSR770WSE [biosample_summary="Homo sapiens breast epithelium tissue female adult (53 years)" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR770WSE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR770WSE [biosamplesummary="Homo sapiens breast epithelium tissue female adult (53 years)" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN901LFV|/analyses/ENCAN901LFV/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF114URN|/files/ENCFF114URN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF114URN|/files/ENCFF114URN/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.85. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR770WSE | float |
Histone_ChIP-seq_ENCSR770WSE |
Histone_ChIP-seq ENCSR770WSE [biosample_summary="Homo sapiens breast epithelium tissue female adult (53 years)" and target="H3K27me3"]
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[1.36, 10.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF191KLY.bed.gz | 59.38 KB | e3d35f8d76d28de64b061b395d7f8d5a |
| ENCFF191KLY.bed.gz.dvc | 99.0 B | e8afb0d2a8cde57426c1e9cafb6f54fc |
| ENCFF191KLY.tabix.bed.gz | 33.79 KB | d093909f921adfea618d8ea9d9ada14f |
| ENCFF191KLY.tabix.bed.gz.dvc | 105.0 B | 4b8ee6baddee580bc33ee22b8c83ab6f |
| ENCFF191KLY.tabix.bed.gz.tbi | 27.33 KB | f126512aa28953b60450d39328cf9876 |
| ENCFF191KLY.tabix.bed.gz.tbi.dvc | 109.0 B | 7f997682c875248ecb2c6d59be1f407d |
| genomic_resource.yaml | 2.78 KB | 33608914a1ab34a559145352f557d0b0 |
| genomic_resource_original.yaml | 2.64 KB | 9e2e39c4bce388be55b55caa1a77e148 |
| statistics/ |