Histone_ChIP-seq_ENCSR770GNM
Histone_ChIP-seq ENCSR770GNM [biosample_summary="Homo sapiens mucosa of stomach tissue male adult (59 years)" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR770GNM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR770GNM [biosamplesummary="Homo sapiens mucosa of stomach tissue male adult (59 years)" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (59 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN956SUH|/analyses/ENCAN956SUH/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF416QJY|/files/ENCFF416QJY/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 29859835 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF416QJY|/files/ENCFF416QJY/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.79. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF416QJY|/files/ENCFF416QJY/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline was generated from a library with PBC2 value of 4.62. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR770GNM | float |
Histone_ChIP-seq_ENCSR770GNM |
Histone_ChIP-seq ENCSR770GNM [biosample_summary="Homo sapiens mucosa of stomach tissue male adult (59 years)" and target="H3K27me3"]
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[1.79, 22.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF299KZS.bed.gz | 778.44 KB | 307d4bcbaf97f127ce005a5f3982818b |
| ENCFF299KZS.bed.gz.dvc | 100.0 B | d7b7b5a4cfd9cbd97c310174aeac87ce |
| ENCFF299KZS.tabix.bed.gz | 394.18 KB | 1a55ed0c4167519a44a5985d5b49a673 |
| ENCFF299KZS.tabix.bed.gz.dvc | 106.0 B | eead6f749eb3859aefd13525ec720588 |
| ENCFF299KZS.tabix.bed.gz.tbi | 137.08 KB | c51b6bf3022c8edd6d31daf52c41ce23 |
| ENCFF299KZS.tabix.bed.gz.tbi.dvc | 110.0 B | d6664c795af949f18c812c1deb5d0090 |
| genomic_resource.yaml | 3.3 KB | c101f713b673f934984b0953cf2fc827 |
| genomic_resource_original.yaml | 3.16 KB | 939bfd08bf5e94f1c79904bf73ff6fb6 |
| statistics/ |