Histone_ChIP-seq_ENCSR768YDB
Histone_ChIP-seq ENCSR768YDB [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (88 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR768YDB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR768YDB [biosamplesummary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (88 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (88 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN949FPG|/analyses/ENCAN949FPG/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF718ORE|/files/ENCFF718ORE/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF718ORE|/files/ENCFF718ORE/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.64. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR768YDB | float |
Histone_ChIP-seq_ENCSR768YDB |
Histone_ChIP-seq ENCSR768YDB [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue female adult (88 years)" and target="H3K4me3"]
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[1.75, 80] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF384NUC.bed.gz | 1.1 MB | fa389c948d2146e9664ceb8305a85225 |
| ENCFF384NUC.bed.gz.dvc | 101.0 B | 03eaaac509a1c3b304320c1f20d0f777 |
| ENCFF384NUC.tabix.bed.gz | 492.02 KB | 0f164bed06e51ac9eab1950435eee05b |
| ENCFF384NUC.tabix.bed.gz.dvc | 106.0 B | 183e80d6edc112eded06699b714504de |
| ENCFF384NUC.tabix.bed.gz.tbi | 235.09 KB | 748c1f2a236c00a4d6aa33b24d7cbba9 |
| ENCFF384NUC.tabix.bed.gz.tbi.dvc | 110.0 B | c67299354d6bec5a4708caa93810637b |
| genomic_resource.yaml | 2.84 KB | a5044d49fb2006e2750a630a6b107297 |
| genomic_resource_original.yaml | 2.68 KB | 964ef2f247f1767d599cae5a1ed435e0 |
| statistics/ |