Histone_ChIP-seq_ENCSR768JED
Histone_ChIP-seq ENCSR768JED [biosample_summary="Homo sapiens OCI-LY1" and target="H3K9me2"]
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| Id: | Histone_ChIP-seq/ENCSR768JED |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR768JED [biosamplesummary="Homo sapiens OCI-LY1" and target="H3K9me2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN242NZJ|/analyses/ENCAN242NZJ/} has in progress subobject document {243425e4-7b0c-4090-81a0-5d3f5d1bf8b7|/documents/243425e4-7b0c-4090-81a0-5d3f5d1bf8b7/} audit_internal_action: Released analysis {ENCAN242NZJ|/analyses/ENCAN242NZJ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed alignments file {ENCFF539XDZ|/files/ENCFF539XDZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 38660894 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF539XDZ|/files/ENCFF539XDZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF539XDZ|/files/ENCFF539XDZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.33. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR768JED | float |
Histone_ChIP-seq_ENCSR768JED |
Histone_ChIP-seq ENCSR768JED [biosample_summary="Homo sapiens OCI-LY1" and target="H3K9me2"]
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[1.67, 4.22] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF241SEE.bed.gz | 32.75 KB | 1023c8fc19805ccc8a7326ddd4972014 |
| ENCFF241SEE.bed.gz.dvc | 99.0 B | bc2be72db88a7452a5c61d5b5e48653b |
| ENCFF241SEE.tabix.bed.gz | 17.42 KB | 7a02d25a19072be3141e50ce9066529f |
| ENCFF241SEE.tabix.bed.gz.dvc | 105.0 B | 0470ea4adcbbd8ddfcb460fb2c5dd88c |
| ENCFF241SEE.tabix.bed.gz.tbi | 19.05 KB | e867637904e2c65aeb32a14e1698c90a |
| ENCFF241SEE.tabix.bed.gz.tbi.dvc | 109.0 B | d5f631e4fd2be6ce151fccae3a0f35a8 |
| genomic_resource.yaml | 3.47 KB | ebfb89153fef95ddf699bffa50431825 |
| genomic_resource_original.yaml | 3.37 KB | 322c07b6bab757e3dcb0074de4978fdb |
| statistics/ |