Histone_ChIP-seq_ENCSR768FWX
Histone_ChIP-seq ENCSR768FWX [biosample_summary="Homo sapiens H1" and target="H3K56ac"]
×
| Id: | Histone_ChIP-seq/ENCSR768FWX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR768FWX [biosamplesummary="Homo sapiens H1" and target="H3K56ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN199POQ|/analyses/ENCAN199POQ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed alignments file {ENCFF826VZK|/files/ENCFF826VZK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 12004403 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K56ac-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF782BDE|/files/ENCFF782BDE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19826267 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K56ac-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF826VZK|/files/ENCFF826VZK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF826VZK|/files/ENCFF826VZK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.18. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF782BDE|/files/ENCFF782BDE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF782BDE|/files/ENCFF782BDE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 4.75. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR768FWX | float |
Histone_ChIP-seq_ENCSR768FWX |
Histone_ChIP-seq ENCSR768FWX [biosample_summary="Homo sapiens H1" and target="H3K56ac"]
|
|
[1.9, 22.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF600YNW.bed.gz | 500.81 KB | df23a2bededbd38874a2fbcfa6821faa |
| ENCFF600YNW.bed.gz.dvc | 100.0 B | 3edb3dd6026a3e94ee31891bc349d352 |
| ENCFF600YNW.tabix.bed.gz | 234.86 KB | 0a6d7cc0279e0bce93cf77df5ec8cca7 |
| ENCFF600YNW.tabix.bed.gz.dvc | 106.0 B | 3a0c35476050e88e55e2771890b17665 |
| ENCFF600YNW.tabix.bed.gz.tbi | 133.46 KB | de86be92ccee0b9fa7c22140b9ebce73 |
| ENCFF600YNW.tabix.bed.gz.tbi.dvc | 110.0 B | 3b0b7b795d0f435cc05fe81fe9a2d400 |
| genomic_resource.yaml | 5.0 KB | af47d3fee7079d6f7288338a4dff19f8 |
| genomic_resource_original.yaml | 4.89 KB | 6fbde1257dc3446f8696be8fb7a39de8 |
| statistics/ |