Histone_ChIP-seq_ENCSR768DMK
Histone_ChIP-seq ENCSR768DMK [biosample_summary="Homo sapiens temporal lobe tissue female adult (75 years)" and target="H3K9ac"]
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| Id: | Histone_ChIP-seq/ENCSR768DMK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR768DMK [biosamplesummary="Homo sapiens temporal lobe tissue female adult (75 years)" and target="H3K9ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (75 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN778AOG|/analyses/ENCAN778AOG/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed redacted alignments file {ENCFF688BUW|/files/ENCFF688BUW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed redacted alignments file {ENCFF688BUW|/files/ENCFF688BUW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.62. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR768DMK | float |
Histone_ChIP-seq_ENCSR768DMK |
Histone_ChIP-seq ENCSR768DMK [biosample_summary="Homo sapiens temporal lobe tissue female adult (75 years)" and target="H3K9ac"]
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[1.86, 49.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF488QII.bed.gz | 1.4 MB | 5be5604715ef382913ba9619439c5b1a |
| ENCFF488QII.bed.gz.dvc | 101.0 B | 2952e030afc6ed9fa8469373f322bb07 |
| ENCFF488QII.tabix.bed.gz | 681.98 KB | 3f1da6f44df1eded72579eec23e8b343 |
| ENCFF488QII.tabix.bed.gz.dvc | 106.0 B | 1a6dfa75b9afb6aa073eecb1f456e5f0 |
| ENCFF488QII.tabix.bed.gz.tbi | 218.25 KB | d7d09327c7a49a9069c0da7c43d3708f |
| ENCFF488QII.tabix.bed.gz.tbi.dvc | 110.0 B | e260a2eaeba86b8e202ec347f1e1f8da |
| genomic_resource.yaml | 2.78 KB | 07ea3dbf343f052b0f5f7aed6b648613 |
| genomic_resource_original.yaml | 2.64 KB | 9dafa9b387a0384ca8432eb5d6512bbf |
| statistics/ |