Histone_ChIP-seq_ENCSR758GMX
Histone_ChIP-seq ENCSR758GMX [biosample_summary="Homo sapiens hepatocyte originated from H9" and target="H3K9me3"]
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| Id: | Histone_ChIP-seq/ENCSR758GMX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR758GMX [biosamplesummary="Homo sapiens hepatocyte originated from H9" and target="H3K9me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female embryo (5 days) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN849OYG|/analyses/ENCAN849OYG/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed unfiltered alignments file {ENCFF863OUQ|/files/ENCFF863OUQ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 34865437 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed unfiltered alignments file {ENCFF045PWH|/files/ENCFF045PWH/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 34865437 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF824QCO|/files/ENCFF824QCO/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF824QCO|/files/ENCFF824QCO/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.54. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR758GMX | float |
Histone_ChIP-seq_ENCSR758GMX |
Histone_ChIP-seq ENCSR758GMX [biosample_summary="Homo sapiens hepatocyte originated from H9" and target="H3K9me3"]
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[1.33, 8.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF136JCP.bed.gz | 449.17 KB | ea6083cc243aadbe68803ef0d6e8f99e |
| ENCFF136JCP.bed.gz.dvc | 100.0 B | 22caa7f99e6ae8d92fb96cdd326752af |
| ENCFF136JCP.tabix.bed.gz | 224.7 KB | eaf9be3eb61bfbc082044abcc77d6738 |
| ENCFF136JCP.tabix.bed.gz.dvc | 106.0 B | 3a1f7757bcc9f91e25a98a4b980b913e |
| ENCFF136JCP.tabix.bed.gz.tbi | 118.8 KB | 45ad5465adf8ad8269a2ae771a0c4f38 |
| ENCFF136JCP.tabix.bed.gz.tbi.dvc | 110.0 B | fe39688d4fee972833cf41164d891750 |
| genomic_resource.yaml | 3.71 KB | a9bed58c08250c427bfded0f8165375f |
| genomic_resource_original.yaml | 3.58 KB | 5619d4fff5405578db515ac95aff0100 |
| statistics/ |