Histone_ChIP-seq_ENCSR753HPM
Histone_ChIP-seq ENCSR753HPM [biosample_summary="Homo sapiens tibial artery tissue male adult (54 years)" and target="H3K36me3"]
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| Id: | Histone_ChIP-seq/ENCSR753HPM |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR753HPM [biosamplesummary="Homo sapiens tibial artery tissue male adult (54 years)" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (54 years) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN843RGX|/analyses/ENCAN843RGX/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF766JNG|/files/ENCFF766JNG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF766JNG|/files/ENCFF766JNG/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.71. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR753HPM | float |
Histone_ChIP-seq_ENCSR753HPM |
Histone_ChIP-seq ENCSR753HPM [biosample_summary="Homo sapiens tibial artery tissue male adult (54 years)" and target="H3K36me3"]
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[1.5, 10.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF120LRR.bed.gz | 1.51 MB | adfcb0773b0784f9c7e44e8ec062b7d6 |
| ENCFF120LRR.bed.gz.dvc | 101.0 B | fc821df418fe1fd0db0bc232d8c3f6c5 |
| ENCFF120LRR.tabix.bed.gz | 742.3 KB | ac21e02c5a1f6a9ae6489f88c7d35b42 |
| ENCFF120LRR.tabix.bed.gz.dvc | 106.0 B | 79bb1c639f110ec588b05c1909d21f41 |
| ENCFF120LRR.tabix.bed.gz.tbi | 148.84 KB | c0f4b123027acb307a7d7d1ba8169efc |
| ENCFF120LRR.tabix.bed.gz.tbi.dvc | 110.0 B | 0cf1c0cffdfd87bd3d357ea3bd2057c4 |
| genomic_resource.yaml | 2.76 KB | 0c8116de7d7e6600ad507338a43b3ff2 |
| genomic_resource_original.yaml | 2.62 KB | 254331675432834e60ddb89f0192501f |
| statistics/ |