Histone_ChIP-seq_ENCSR748OJA
Histone_ChIP-seq ENCSR748OJA [biosample_summary="Homo sapiens heart left ventricle tissue male adult (69 years)" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR748OJA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR748OJA [biosamplesummary="Homo sapiens heart left ventricle tissue male adult (69 years)" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (69 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN022VSN|/analyses/ENCAN022VSN/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF381UDR|/files/ENCFF381UDR/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF381UDR|/files/ENCFF381UDR/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.76. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR748OJA | float |
Histone_ChIP-seq_ENCSR748OJA |
Histone_ChIP-seq ENCSR748OJA [biosample_summary="Homo sapiens heart left ventricle tissue male adult (69 years)" and target="H3K27ac"]
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[1.68, 78.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF616PCH.bed.gz | 1.86 MB | 46fb2d0b939ec968d57ac34a3f4a8295 |
| ENCFF616PCH.bed.gz.dvc | 101.0 B | fcf8b709be28e4a186918f819797756e |
| ENCFF616PCH.tabix.bed.gz | 819.88 KB | 0e3cffc120e3ae1cf9899cc0629e334b |
| ENCFF616PCH.tabix.bed.gz.dvc | 106.0 B | d1f1836edde607bd6cf7f104ff4a6b6d |
| ENCFF616PCH.tabix.bed.gz.tbi | 255.55 KB | 7b8f785e6491d869729ea40839b9866b |
| ENCFF616PCH.tabix.bed.gz.tbi.dvc | 110.0 B | c5f37f7d1d4eb916b476f37f16283749 |
| genomic_resource.yaml | 2.79 KB | 543f9879c4aad9dd893e233761da0721 |
| genomic_resource_original.yaml | 2.65 KB | f6553b4f50593f4ceb18506d213d3455 |
| statistics/ |