Resource
| Id | Histone_ChIP-seq/ENCSR748LUA |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR748LUA [biosample_summary="Homo sapiens thyroid gland tissue male adult (37 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (37 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN583YSQ|/analyses/ENCAN583YSQ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF366IPI|/files/ENCFF366IPI/} processed by ChIP-seq ENCODE3 hg19 pipeline has 26799101 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF242PVI|/files/ENCFF242PVI/} processed by ChIP-seq ENCODE3 hg19 pipeline has 39533937 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR748LUA | float |
Histone_ChIP-seq_ENCSR748LUA |
Histone_ChIP-seq ENCSR748LUA [biosample_summary="Homo sapiens thyroid gland tissue male adult (37 years)" and target="H3K27me3"]
|
 |
[1.51, 5.31] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 24192 | <0.01% | 177 |
| chr1 | 3327 | <0.01% | 24 |
| chr2 | 2081 | <0.01% | 13 |
| chr3 | 708 | <0.01% | 6 |
| chr4 | 2054 | <0.01% | 14 |
| chr5 | 2730 | <0.01% | 19 |
| chr6 | 1812 | <0.01% | 14 |
| chr7 | 906 | <0.01% | 7 |
| chr8 | 759 | <0.01% | 5 |
| chr9 | 1671 | <0.01% | 12 |
| chr10 | 957 | <0.01% | 7 |
| chr11 | 120 | <0.01% | 1 |
| chr12 | 841 | <0.01% | 6 |
| chr13 | 586 | <0.01% | 5 |
| chr14 | 233 | <0.01% | 2 |
| chr15 | 552 | <0.01% | 5 |
| chr16 | 698 | <0.01% | 6 |
| chr17 | 1297 | <0.01% | 9 |
| chr18 | 458 | <0.01% | 4 |
| chr19 | 1029 | <0.01% | 7 |
| chr20 | 615 | <0.01% | 5 |
| chr21 | 655 | <0.01% | 5 |
| chr22 | 103 | <0.01% | 1 |
| 3344 contigs with no values (342345395 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 177 | 100 | 484 | 136.68 | 123 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF041LZZ.bed.gz | 3.68 KB | a2d367a7096bc4e0aac724f624845581 |
| ENCFF041LZZ.tabix.bed.gz | 1.99 KB | e26f9c20b0dc65e7b5c341fa6599e5c5 |
| ENCFF041LZZ.tabix.bed.gz.tbi | 5.59 KB | 41db73393e20397f2a606de3fc6cfe98 |
| genomic_resource.yaml | 2.46 KB | e1aa8c096cd27aab2cb17d467e8f01c0 |
| statistics/ |