Resource
| Id | Histone_ChIP-seq/ENCSR746CUY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR746CUY [biosample_summary="Homo sapiens mesenchymal stem cell originated from H1" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male embryo output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN522OBS|/analyses/ENCAN522OBS/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed unfiltered alignments file {ENCFF960BQY|/files/ENCFF960BQY/} processed by ChIP-seq ENCODE3 hg19 pipeline has 44493332 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed unfiltered alignments file {ENCFF455NFD|/files/ENCFF455NFD/} processed by ChIP-seq ENCODE3 hg19 pipeline has 43721888 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR746CUY | float |
Histone_ChIP-seq_ENCSR746CUY |
Histone_ChIP-seq ENCSR746CUY [biosample_summary="Homo sapiens mesenchymal stem cell originated from H1" and target="H3K9me3"]
|
 |
[1.26, 22.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 35453539 | 1.10% | 124883 |
| chr1 | 2150783 | 0.86% | 7601 |
| chr2 | 2430929 | 1.00% | 9121 |
| chr3 | 1576038 | 0.79% | 5811 |
| chr4 | 1382919 | 0.73% | 4817 |
| chr5 | 2176735 | 1.20% | 7911 |
| chr6 | 1150756 | 0.67% | 4309 |
| chr7 | 2187443 | 1.37% | 7813 |
| chr8 | 2032705 | 1.40% | 7520 |
| chr9 | 1146893 | 0.83% | 3982 |
| chr10 | 2055352 | 1.54% | 7458 |
| chr11 | 1402191 | 1.04% | 5136 |
| chr12 | 1562743 | 1.17% | 5606 |
| chr13 | 869557 | 0.76% | 3191 |
| chr14 | 1162210 | 1.09% | 4317 |
| chr15 | 1216392 | 1.19% | 4414 |
| chr16 | 1872587 | 2.07% | 6645 |
| chr17 | 920364 | 1.11% | 3250 |
| chr18 | 1199200 | 1.49% | 4456 |
| chr19 | 3713577 | 6.34% | 10042 |
| chr20 | 1141411 | 1.77% | 3992 |
| chr21 | 817444 | 1.75% | 2736 |
| chr22 | 837232 | 1.65% | 2871 |
| chrX | 349538 | 0.22% | 1532 |
| chrY | 98540 | 0.17% | 352 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 124883 | 120 | 24370 | 283.89 | 231 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF488FFQ.bed.gz | 2.3 MB | 61d6ec8dcc8ef64ac79f2e615d1923e9 |
| ENCFF488FFQ.tabix.bed.gz | 1.16 MB | 0941a2f283be3d7f3f9bc04ba22f5849 |
| ENCFF488FFQ.tabix.bed.gz.tbi | 328.12 KB | 35b453d8396fc606a236267fafaada1f |
| genomic_resource.yaml | 2.45 KB | af3fcc7009fa5f46003a218ea21245d9 |
| statistics/ |