Histone_ChIP-seq_ENCSR744VAH
Histone_ChIP-seq ENCSR744VAH [biosample_summary="Homo sapiens heart right ventricle tissue male adult (73 years)" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR744VAH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR744VAH [biosamplesummary="Homo sapiens heart right ventricle tissue male adult (73 years)" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (73 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN009OCA|/analyses/ENCAN009OCA/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF017RTS|/files/ENCFF017RTS/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF017RTS|/files/ENCFF017RTS/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.87. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR744VAH | float |
Histone_ChIP-seq_ENCSR744VAH |
Histone_ChIP-seq ENCSR744VAH [biosample_summary="Homo sapiens heart right ventricle tissue male adult (73 years)" and target="H3K4me1"]
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[1.59, 11.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF843ZFG.bed.gz | 2.68 MB | be721fc2cd20d0e3c8c86c5c05343ad1 |
| ENCFF843ZFG.bed.gz.dvc | 101.0 B | 98e04672e5ab398344ccef1948bd62f7 |
| ENCFF843ZFG.tabix.bed.gz | 1.23 MB | 20d14d4aed3eaedcd71fa856cf9562fe |
| ENCFF843ZFG.tabix.bed.gz.dvc | 107.0 B | ff432f558ce4d0f1d7ece575e5927983 |
| ENCFF843ZFG.tabix.bed.gz.tbi | 294.88 KB | ae5854af4b641208cc1b841fe1729419 |
| ENCFF843ZFG.tabix.bed.gz.tbi.dvc | 110.0 B | 32c874f86d000d30c150f7a050e5352b |
| genomic_resource.yaml | 2.79 KB | f0c0f6a2d944e5fcbdc8c99046443e0e |
| genomic_resource_original.yaml | 2.65 KB | 97f583d846b2e75a13a041a16f7b1413 |
| statistics/ |