Resource
| Id | Histone_ChIP-seq/ENCSR744VAH |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR744VAH [biosample_summary="Homo sapiens heart right ventricle tissue male adult (73 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (73 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN009OCA|/analyses/ENCAN009OCA/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF017RTS|/files/ENCFF017RTS/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF017RTS|/files/ENCFF017RTS/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.87. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR744VAH | float |
Histone_ChIP-seq_ENCSR744VAH |
Histone_ChIP-seq ENCSR744VAH [biosample_summary="Homo sapiens heart right ventricle tissue male adult (73 years)" and target="H3K4me1"]
|
 |
[1.59, 11.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 160383732 | 4.98% | 117812 |
| chr1 | 15985384 | 6.42% | 11401 |
| chr2 | 13064015 | 5.39% | 9559 |
| chr3 | 11722776 | 5.91% | 8418 |
| chr4 | 6622725 | 3.48% | 5294 |
| chr5 | 9131638 | 5.03% | 6830 |
| chr6 | 9086476 | 5.32% | 6914 |
| chr7 | 7603873 | 4.77% | 5933 |
| chr8 | 7076124 | 4.88% | 5397 |
| chr9 | 6891662 | 4.98% | 4903 |
| chr10 | 8939915 | 6.68% | 6301 |
| chr11 | 8510681 | 6.30% | 6005 |
| chr12 | 8053402 | 6.04% | 5842 |
| chr13 | 4160486 | 3.64% | 3062 |
| chr14 | 5275151 | 4.93% | 3741 |
| chr15 | 5992331 | 5.88% | 4280 |
| chr16 | 5113981 | 5.66% | 3804 |
| chr17 | 7781214 | 9.35% | 5352 |
| chr18 | 3264317 | 4.06% | 2607 |
| chr19 | 4917978 | 8.39% | 3695 |
| chr20 | 4531197 | 7.03% | 3210 |
| chr21 | 1557243 | 3.33% | 1231 |
| chr22 | 3899640 | 7.67% | 2683 |
| chrX | 1179834 | 0.76% | 1316 |
| chrY | 21689 | 0.04% | 34 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 117812 | 240 | 41041 | 1361.35 | 978 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF843ZFG.bed.gz | 2.68 MB | be721fc2cd20d0e3c8c86c5c05343ad1 |
| ENCFF843ZFG.tabix.bed.gz | 1.23 MB | 20d14d4aed3eaedcd71fa856cf9562fe |
| ENCFF843ZFG.tabix.bed.gz.tbi | 294.88 KB | ae5854af4b641208cc1b841fe1729419 |
| genomic_resource.yaml | 2.79 KB | f0c0f6a2d944e5fcbdc8c99046443e0e |
| statistics/ |