Histone_ChIP-seq_ENCSR743JIT
Histone_ChIP-seq ENCSR743JIT [biosample_summary="Homo sapiens iPS-18a" and target="H3K27me3"]
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| Id: | Histone_ChIP-seq/ENCSR743JIT |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR743JIT [biosamplesummary="Homo sapiens iPS-18a" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN610DGF|/analyses/ENCAN610DGF/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN610DGF|/analyses/ENCAN610DGF/} has in progress subobject document {bf5584ea-b3ba-4f03-b0ad-1558742ea2b2|/documents/bf5584ea-b3ba-4f03-b0ad-1558742ea2b2/} audit_not_compliant: Processed alignments file {ENCFF189FVI|/files/ENCFF189FVI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 27088738 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF189FVI|/files/ENCFF189FVI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF189FVI|/files/ENCFF189FVI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 4.87. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR743JIT | float |
Histone_ChIP-seq_ENCSR743JIT |
Histone_ChIP-seq ENCSR743JIT [biosample_summary="Homo sapiens iPS-18a" and target="H3K27me3"]
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[1.81, 82.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF064BOC.bed.gz | 701.74 KB | ff51866c7a14a6e4a154dc24798484c8 |
| ENCFF064BOC.bed.gz.dvc | 100.0 B | 252ff133ec3a3e261c6d7c8265c7579a |
| ENCFF064BOC.tabix.bed.gz | 317.39 KB | 479eae80741dfcce878eace930751d0c |
| ENCFF064BOC.tabix.bed.gz.dvc | 106.0 B | e5fc40ac60310dd57abd2c3788386613 |
| ENCFF064BOC.tabix.bed.gz.tbi | 120.87 KB | ca8ef16abbf14664487668b9658866ff |
| ENCFF064BOC.tabix.bed.gz.tbi.dvc | 110.0 B | e5ab168bbc905acb8f4361baf0c4fd8e |
| genomic_resource.yaml | 3.42 KB | 8a883d2aadf59a068ed5bd1a6f093af5 |
| genomic_resource_original.yaml | 3.31 KB | 0a8197b7b1b63d35bb527e6aebf52dc5 |
| statistics/ |