Histone_ChIP-seq_ENCSR743GCE
Histone_ChIP-seq ENCSR743GCE [biosample_summary="Homo sapiens uterus tissue female adult (51 years)" and target="H3K4me3"]
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| Id: | Histone_ChIP-seq/ENCSR743GCE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR743GCE [biosamplesummary="Homo sapiens uterus tissue female adult (51 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (51 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN876QIW|/analyses/ENCAN876QIW/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF991UKU|/files/ENCFF991UKU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF991UKU|/files/ENCFF991UKU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.41. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR743GCE | float |
Histone_ChIP-seq_ENCSR743GCE |
Histone_ChIP-seq ENCSR743GCE [biosample_summary="Homo sapiens uterus tissue female adult (51 years)" and target="H3K4me3"]
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[1.19, 27.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF141BCE.bed.gz | 568.35 KB | 29f9b357d48de864e7c4ebcffe546e84 |
| ENCFF141BCE.bed.gz.dvc | 100.0 B | b26a247af63182960d47207ffb8812f0 |
| ENCFF141BCE.tabix.bed.gz | 237.02 KB | 06fc6678c96ad92ebdd6172890b5f0e4 |
| ENCFF141BCE.tabix.bed.gz.dvc | 106.0 B | 7addf7d2f1a1123c7c326582602250ce |
| ENCFF141BCE.tabix.bed.gz.tbi | 136.59 KB | 15cf564ea20204d4ce272a0fbc1b1108 |
| ENCFF141BCE.tabix.bed.gz.tbi.dvc | 110.0 B | 4571016c2ad2b09b68d3d0c96a3fa592 |
| genomic_resource.yaml | 2.74 KB | ad2f6ca1f208f6d11f9cca6223a78f34 |
| genomic_resource_original.yaml | 2.61 KB | ec340b60d9590363ce5f3f98901de788 |
| statistics/ |