Histone_ChIP-seq_ENCSR743DDX
Histone_ChIP-seq ENCSR743DDX [biosample_summary="Homo sapiens stomach tissue female embryo (96 days)" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR743DDX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR743DDX [biosamplesummary="Homo sapiens stomach tissue female embryo (96 days)" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (96 days) output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN988DEF|/analyses/ENCAN988DEF/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF081CDJ|/files/ENCFF081CDJ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF081CDJ|/files/ENCFF081CDJ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.21. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR743DDX | float |
Histone_ChIP-seq_ENCSR743DDX |
Histone_ChIP-seq ENCSR743DDX [biosample_summary="Homo sapiens stomach tissue female embryo (96 days)" and target="H3K27ac"]
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[1.81, 118] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF878SVN.bed.gz | 2.04 MB | 6160937174c25761149ad03ec74dc09e |
| ENCFF878SVN.bed.gz.dvc | 101.0 B | f843376a63534c5b9eda407811db679e |
| ENCFF878SVN.tabix.bed.gz | 932.53 KB | 55b4f3246f40a9b14de4451bd7298539 |
| ENCFF878SVN.tabix.bed.gz.dvc | 106.0 B | ceb5fe73d067ca88e30ee09701237352 |
| ENCFF878SVN.tabix.bed.gz.tbi | 269.68 KB | 12ffcd12b9794bdc30fc3cb60e11a348 |
| ENCFF878SVN.tabix.bed.gz.tbi.dvc | 110.0 B | 5e75342f8fc8eabbcf01f01dbacfbc57 |
| genomic_resource.yaml | 2.75 KB | 5e65fedfdaa41a3faa07269e5253aebe |
| genomic_resource_original.yaml | 2.61 KB | b06de3e09ba475df6da72ca6cfe89b8a |
| statistics/ |